PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G071034_P01
Common Namepco086234b
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 307aa    MW: 31891 Da    PI: 9.9906
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G071034_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.64.9e-09106131227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        kt+ C  +  t  Ck+Gd+C+FaH++
  GRMZM2G071034_P01 106 KTRMCTKYNTTEGCKFGDKCHFAHSE 131
                        89**********************95 PP
2zf-CCCH39.31.1e-12274299127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ykt+lC +f++ G C +GdrC+FaHg+
  GRMZM2G071034_P01 274 YKTKLCENFLK-GACTFGDRCHFAHGE 299
                        9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.3243765IPR000571Zinc finger, CCCH-type
SMARTSM003564.13764IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-53862IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-73962IPR000571Zinc finger, CCCH-type
PfamPF146081.54562No hitNo description
Gene3DG3DSA:4.10.1000.102.1E-14103136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-8103135IPR000571Zinc finger, CCCH-type
SMARTSM003560.017104131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582104132IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5106131IPR000571Zinc finger, CCCH-type
SMARTSM003224.0E-11171241IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.103.5E-14171241IPR004088K Homology domain, type 1
PROSITE profilePS5008414.697172236IPR004088K Homology domain, type 1
PfamPF000131.4E-10174237IPR004088K Homology domain, type 1
CDDcd001051.81E-13174236No hitNo description
SuperFamilySSF547917.76E-14174264IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.104.8E-15270303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-9272303IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-9273299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.553273300IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-10274299IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020127anatomyprimary root
PO:0007015developmental stageradicle emergence stage
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEGTAAARKR SRPETANGAA AAGKRSKDTE SFQTGLSSKS KPCTKFFSTI GCPFGEGCHF  60
LHFVPGGYPA VAKMLNLSSS AVSAPSRTHV DHAALTGASH PASTVKTRMC TKYNTTEGCK  120
FGDKCHFAHS ERELAKPAYM SQEGPPMGGR YGRAEPMQPA AMGPPAGNFG ASATAKISVD  180
ASLAGGIIGK GGVNTKQISR ITGVKLSIRD HESNPNLKNI ELEGNFDQIK QASDLVRDLI  240
ATISASMPAK NPSAAAAPAG GGRGGGPGGK SSNYKTKLCE NFLKGACTFG DRCHFAHGET  300
EQRRGAA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.944410.0cell culture| ear| endosperm| meristem| ovary| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G071034
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G071034_P01
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0342970.0BT034297.1 Zea mays full-length cDNA clone ZM_BFc0007B18 mRNA, complete cds.
GenBankEU9642470.0EU964247.1 Zea mays clone 277297 zinc finger C-x8-C-x5-C-x3-H type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130916.10.0uncharacterized protein LOC100192020
SwissprotQ7XPK11e-150C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLA0A3L6FVH30.0A0A3L6FVH3_MAIZE; Zinc finger CCCH domain-containing protein 31
TrEMBLB4FB090.0B4FB09_MAIZE; Zinc finger C-x8-C-x5-C-x3-H type family protein
TrEMBLK4JCC80.0K4JCC8_MAIZE; C3H-type transcription factor (Fragment)
STRINGGRMZM2G071034_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-65C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]