PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G070523_P01 | ||||||||
Common Name | LOC100274206 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB | ||||||||
Protein Properties | Length: 459aa MW: 48976.7 Da PI: 6.8324 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.4 | 8.8e-15 | 42 | 89 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed l d v+ +G g+W+++ r g+ R++k+c++rw ++l GRMZM2G070523_P01 42 KGPWTAAEDAMLMDHVRHHGEGNWNAVQRVTGLLRCGKSCRLRWTNHL 89 79******************************99***********996 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3.1e-16 | 95 | 138 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+++++E++l++++++qlG++ W++ a++++ gRt++++k++w++ GRMZM2G070523_P01 95 KGSFSPDEELLIAQLHAQLGNK-WARMAAHLP-GRTDNEIKNYWNT 138 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.578 | 37 | 89 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-12 | 41 | 91 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.06E-28 | 41 | 136 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.9E-13 | 42 | 89 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.7E-21 | 43 | 96 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.01E-10 | 44 | 89 | No hit | No description |
PROSITE profile | PS51294 | 22.717 | 90 | 144 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-14 | 94 | 142 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-15 | 95 | 138 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.44E-11 | 97 | 138 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-24 | 97 | 143 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MEKSPGAAPT SSPEEEVAAD GRGHVEDATG QKEQATPVVL KKGPWTAAED AMLMDHVRHH 60 GEGNWNAVQR VTGLLRCGKS CRLRWTNHLR PNLKKGSFSP DEELLIAQLH AQLGNKWARM 120 AAHLPGRTDN EIKNYWNTRT KRRQRAGLPV HPPPEVQLQL ALARRCRYDD FSPLPSPQEL 180 SGVQALVGAA ASAGYASSRP APLDLARQLT QTTNQQTETV QFLSPPPFSA PSSPWARPFA 240 RNAQYFQLAH SSSPVSPTTP DLSLGYGARS AGADQSRLPP LSPSPCPRVV ELPSNQYAQP 300 TPPASAAATA LGGGGAALPD HQNAASLEKM LRELHDVIKV DPPALVPASG GAALEWHGGG 360 EFVSGLQALQ QHRVDDMDTL FGLLHPPLRR APETVAAAAA GSTHSGSTSQ HSSDDQKPTD 420 VVGLGLDLDL QVAGSTVSSD QEDWGLDAVC QWSSVSRIC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-27 | 40 | 143 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G070523 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G070523_P01 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042537 | 0.0 | BT042537.1 Zea mays full-length cDNA clone ZM_BFb0325G13 mRNA, complete cds. | |||
GenBank | KJ727532 | 0.0 | KJ727532.1 Zea mays clone pUT5392 MYB transcription factor (MYB129) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008681539.1 | 0.0 | putative MYB DNA-binding domain superfamily protein isoform X1 | ||||
TrEMBL | A0A1D6GMC0 | 0.0 | A0A1D6GMC0_MAIZE; Myb domain protein 101 | ||||
STRING | GRMZM2G070523_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7420 | 37 | 50 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.1 | 4e-63 | myb domain protein 101 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G070523_P01 |
Entrez Gene | 100274206 |