PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G070446_P01
Common NameLOC103629496, Zm.144168
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family DBB
Protein Properties Length: 375aa    MW: 40436.9 Da    PI: 4.8717
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G070446_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.91.6e-06446541
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                        C+ ++  e++  C  ++  lC  C +e H        H++v+
  GRMZM2G070446_P01  4 QCNACGAAEARVLCCADEAALCVACDEEVHAAnklagkHQRVQ 46
                       6******99*********************6678899998876 PP

2zf-B_box29.31.8e-096294335
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                        +kC+ ++e    +fC +++ llC+dC +++H 
  GRMZM2G070446_P01 62 VPKCDICQEASGYFFCLEDRALLCRDCDVAIHT 94
                       589****************************93 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.054147IPR000315B-box-type zinc finger
CDDcd000213.96E-8347No hitNo description
SMARTSM003366.9E-9447IPR000315B-box-type zinc finger
SMARTSM003366.2E-1660107IPR000315B-box-type zinc finger
CDDcd000212.77E-963107No hitNo description
PfamPF006433.7E-76394IPR000315B-box-type zinc finger
PROSITE profilePS501198.74565107IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MRIQCNACGA AEARVLCCAD EAALCVACDE EVHAANKLAG KHQRVQLLTD SATAAASPAP  60
AVPKCDICQE ASGYFFCLED RALLCRDCDV AIHTVNSFVS VHQRFLLTGV QVGLDPADPV  120
PPIAEKHVNA SGGSVKQSVR HLPRRSPGVQ FSVEGSASVP SKNVSNGDYS RQNSVPTARA  180
EVVDWTKNNT TIQSVESPPK YMSEESPTLL QSSQTTTVFS NQINGNSDGT YHLSFSSGNV  240
TDSLPDWPVD EFFSNSEYVP NLGFSEHGSS KGDNAKLESA GGSLQCRLAE GSIAEELLGQ  300
VPGLITDDYM SRVPENSWTV PEVPSPPTAS GLNWHGNLCF PAYDSTMFVP EITSLQNSQN  360
QFTVPSSFKR RRREY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.814360.0aerial organ| endosperm| glume| meristem| ovary| pericarp
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G070446
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G070446_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0352330.0BT035233.1 Zea mays full-length cDNA clone ZM_BFb0047A02 mRNA, complete cds.
GenBankKJ7285310.0KJ728531.1 Zea mays clone pUT6836 orphans transcription factor (Orphan243) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001333763.10.0probable salt tolerance protein
TrEMBLA0A1D6LL880.0A0A1D6LL88_MAIZE; B-box zinc finger protein 22
STRINGGRMZM2G070446_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Representative plantOGRP18041634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.14e-63light-regulated zinc finger protein 1