PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G070371_P01
Common NameGRAS14, LOC103648201
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 599aa    MW: 67026.7 Da    PI: 6.5602
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G070371_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS264.53.7e-812105953373
               GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkf 93 
                         lL++c++a+++gd+ +a+++La+++++as +gd+ qR+a++f+++++ar+a+++s + +   ++s+ ++++ ++ l+a++l+  ++ +l++
  GRMZM2G070371_P01 210 ALLTSCVKALADGDHVAARNVLAQVKQHASATGDAAQRMAHCFARGIEARIAGTGSWIWRLRmSVSAHHPSSAVDFLKAYSLYTRACCFLNV 301
                        589**************************************************9999988654888899999******************** PP

               GRAS  94 shltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesg..skeeleetgerLakfAeelgvp.fe 177
                        +++    +I++a++g+ + +Hi+D++  +G+QW+ Ll+ L++ +    +g p ++ T++ +p++     e++e++g+rL+k A+elg p f+
  GRMZM2G070371_P01 302 TFIFSAMTIVQAMAGNkSSLHIVDYGTRYGFQWAGLLRLLSTSSskqqAGLPVVKFTAITDPRPAhyPGEQVERIGRRLTKCARELGFPsFK 393
                        ***************97889********************96654556889**********9999999*******************966** PP

               GRAS 178 fnvlvakrledleleeLrvkp......gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                        f++ +++++ed++  +L+ +       +E+l+V+  ++   l++esv  +s  +rd+vL  v++++P+v++ +  + ++ ++sFl rf e l
  GRMZM2G070371_P01 394 FHA-ITRKWEDVSAVDLHRNDddddddREVLVVSDLFSFSVLMEESVFFDSpsPRDTVLGNVRRMRPDVFIQSVTNRSY-GSSFLSRFREML 483
                        ***.799**********88878888899******************98777669*****************99999999.679********* PP

               GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353
                         yy+a+fd+l+a++pres+ r ++E++llg  + n ++ceg + ++r e++++W++r ++aG++++pl+ +++k ++  + k++ + ++v +
  GRMZM2G070371_P01 484 FYYMAVFDMLDATVPRESRSRLVLEQVLLGHYVFNDISCEGMDLVQRPEKYRQWQARNRRAGLRQLPLKPSIVKAVEDEVTKHYHRDFMVCQ 575
                        ************************************************************************************999***** PP

               GRAS 354 esgslvlgWkdrpLvsvSaW 373
                        + ++l++gW++r+L++ +aW
  GRMZM2G070371_P01 576 DGQWLLQGWMGRALTAHTAW 595
                        ******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.859182576IPR005202Transcription factor GRAS
PfamPF035141.3E-78210595IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0004006anatomymesophyll cell
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0025589anatomyleaf lamina tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MATTPEDFFI QDLTAQPPAS PPVFLDLLQK PSVASNNEVW RHVVPDNDMV LPYISHMLME  60
DDDDVDDELI SDDPTLLQVQ QPFAQILSSP SSLGTNTTSN MEGCRRQRPN GSLQQAGLGH  120
GDDEQSALSS AYKGGAKGRP TMTFKEEEPE EKRGSEMFDE MMSRAYETCI KSMERVAVDN  180
SGGGGGGAHD KRNRRTGRSA RGSNVVDIGA LLTSCVKALA DGDHVAARNV LAQVKQHASA  240
TGDAAQRMAH CFARGIEARI AGTGSWIWRL RMSVSAHHPS SAVDFLKAYS LYTRACCFLN  300
VTFIFSAMTI VQAMAGNKSS LHIVDYGTRY GFQWAGLLRL LSTSSSKQQA GLPVVKFTAI  360
TDPRPAHYPG EQVERIGRRL TKCARELGFP SFKFHAITRK WEDVSAVDLH RNDDDDDDDR  420
EVLVVSDLFS FSVLMEESVF FDSPSPRDTV LGNVRRMRPD VFIQSVTNRS YGSSFLSRFR  480
EMLFYYMAVF DMLDATVPRE SRSRLVLEQV LLGHYVFNDI SCEGMDLVQR PEKYRQWQAR  540
NRRAGLRQLP LKPSIVKAVE DEVTKHYHRD FMVCQDGQWL LQGWMGRALT AHTAWVADI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-2521059589472Protein SHORT-ROOT
5b3h_B1e-2521059535418Protein SHORT-ROOT
5b3h_E1e-2521059535418Protein SHORT-ROOT
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G070371
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G070371_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270170.0KJ727017.1 Zea mays clone pUT3998 GRAS transcription factor (GRAS14) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008670910.10.0scarecrow-like protein 9
TrEMBLA0A060D4L70.0A0A060D4L7_MAIZE; GRAS transcription factor (Fragment)
STRINGGRMZM2G070371_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23131297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.12e-90GRAS family protein