PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G069486_P02
Common NameZEAMMB73_523488, Zm.125347
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family BES1
Protein Properties Length: 365aa    MW: 40668 Da    PI: 8.8796
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G069486_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822160.21.3e-49421814134
             DUF822   4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspess 93 
                        +++++++E+E++k+RER+RRai+ +++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r + +pl    ++  g+++ as+e++
  GRMZM2G069486_P02  42 QEREREREKERTKLRERHRRAITGRMLAGLRQHGNFPLPARADMNDVLAALARAAGWTVQPDGTTFRSSNQPLlpPPPQLHGAFQVASVETP 133
                        67899*******************************************************************999999************** PP

             DUF822  94 lq.sslkssalaspvesysaspksssfpspssldsislasa......a 134
                           ++l+s+a+ +p++s+++ +++++++spsslds+ +          
  GRMZM2G069486_P02 134 ALiNTLSSYAIGTPLDSQASALQTDDSLSPSSLDSVVADRRiktenhG 181
                        9999*******************************9876445544443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.1E-4742191IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene3DG3DSA:3.20.20.801.7E-56210355IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514456.55E-52211361IPR017853Glycoside hydrolase superfamily
PfamPF013732.4E-23233351IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.4E-12248262IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.4E-12269287IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.4E-12291312IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MKHPLHRDGE SYPSPPPQRR PRGFASAPAP AAGASPRRRG VQEREREREK ERTKLRERHR  60
RAITGRMLAG LRQHGNFPLP ARADMNDVLA ALARAAGWTV QPDGTTFRSS NQPLLPPPPQ  120
LHGAFQVASV ETPALINTLS SYAIGTPLDS QASALQTDDS LSPSSLDSVV ADRRIKTENH  180
GNSSSVSSLN CMDNDQQLTR SVLFPDDYTK TPYIPVYASL PMGIINSHCQ LVDPESVRAE  240
LRQLKSLNVD GVVVDCWWGI VEAWTPRKYE WSGYRDLFGI IKEFKLKVQV VLSFHGSGET  300
GSGDVLISLP KWIMEIAKEN QDIFFTDREG RRNTECLSWG IDKERVLRGR TGIEVLGHTW  360
SVLIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1fa2_A8e-4221335512154BETA-AMYLASE
5wqs_A9e-4221335512154Beta-amylase
5wqu_A8e-4221335512154Beta-amylase
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G069486
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G069486_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN1793996e-91FN179399.1 Hordeum vulgare subsp. vulgare partial mRNA for beta-amylase (BAM7 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008679986.10.0beta-amylase 8 isoform X3
RefseqXP_020408535.10.0beta-amylase 8 isoform X1
RefseqXP_020408539.10.0beta-amylase 8 isoform X6
SwissprotQ9FH801e-115BAM8_ARATH; Beta-amylase 8
TrEMBLA0A1D6QTZ80.0A0A1D6QTZ8_MAIZE; Beta-amylase
TrEMBLA0A2D0ZCW90.0A0A2D0ZCW9_MAIZE; Beta-amylase
STRINGGRMZM2G069486_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.21e-102beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]