PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G069486_P01
Common NameLOC103654954, ZEAMMB73_523488, Zm.125347
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family BES1
Protein Properties Length: 651aa    MW: 73266.5 Da    PI: 6.5986
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G069486_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822158.64.2e-49421814134
             DUF822   4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspess 93 
                        +++++++E+E++k+RER+RRai+ +++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r + +pl    ++  g+++ as+e++
  GRMZM2G069486_P01  42 QEREREREKERTKLRERHRRAITGRMLAGLRQHGNFPLPARADMNDVLAALARAAGWTVQPDGTTFRSSNQPLlpPPPQLHGAFQVASVETP 133
                        67899*******************************************************************999999************** PP

             DUF822  94 lq.sslkssalaspvesysaspksssfpspssldsislasa......a 134
                           ++l+s+a+ +p++s+++ +++++++spsslds+ +          
  GRMZM2G069486_P01 134 ALiNTLSSYAIGTPLDSQASALQTDDSLSPSSLDSVVADRRiktenhG 181
                        9999*******************************9876445444432 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056876.7E-4742191IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene3DG3DSA:3.20.20.801.5E-170210645IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514451.28E-164211645IPR017853Glycoside hydrolase superfamily
PfamPF013731.0E-81233604IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.2E-54248262IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.2E-54269287IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.2E-54291312IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.2E-54384406IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.2E-54457476IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.2E-54491507IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.2E-54508519IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.2E-54526549IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.2E-54566588IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MKHPLHRDGE SYPSPPPQRR PRGFASAPAP AAGASPRRRG VQEREREREK ERTKLRERHR  60
RAITGRMLAG LRQHGNFPLP ARADMNDVLA ALARAAGWTV QPDGTTFRSS NQPLLPPPPQ  120
LHGAFQVASV ETPALINTLS SYAIGTPLDS QASALQTDDS LSPSSLDSVV ADRRIKTENH  180
GNSSSVSSLN CMDNDQQLTR SVLFPDDYTK TPYIPVYASL PMGIINSHCQ LVDPESVRAE  240
LRQLKSLNVD GVVVDCWWGI VEAWTPRKYE WSGYRDLFGI IKEFKLKVQV VLSFHGSGET  300
GSGDVLISLP KWIMEIAKEN QDIFFTDREG RRNTECLSWG IDKERVLRGR TGIEVCFDFM  360
RSFHMEFRNL SEEGLVSSIE IGLGASGELR YPSCPETMGW KYPGIGEFQC YDRYMQKNLR  420
QSALSRGHLF WARGPDNAGY YNSRPHETGF FCDGGDYDSY YGRFFLNWYS GVLMDHVDQV  480
LSLATLAFDG AEIVVKVPSI YWWYRTASHA AELTAGFYNT TNRDGYSPVF RMLKKHSVIL  540
KLVCYGPEYT VHEKDDDEAF ADPEGLTWQV INAAWDQGLP LCIESALPCR NGEAYSRILD  600
TAKPRDDPDR HHAASFAYRQ QQQPPLREAC LSELCTFVKC MHGEAPQNGE G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12221364411444Beta-amylase
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G069486
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G069486_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN1793990.0FN179399.1 Hordeum vulgare subsp. vulgare partial mRNA for beta-amylase (BAM7 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008679986.10.0beta-amylase 8 isoform X3
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A2D0ZCW90.0A0A2D0ZCW9_MAIZE; Beta-amylase
STRINGGRMZM2G069486_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Representative plantOGRP97651112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]