PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G069408_P01
Common NameLOC103650671, LOC103650673, Zm.77539
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 888aa    MW: 96926.6 Da    PI: 7.354
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G069408_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000436967331355
                        HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        R+ i +++ eLrel+P+ a      K s  + Lek+++++  Lq
  GRMZM2G069408_P01 696 RQLIQDRIKELRELVPNgA------KCSIDALLEKTIKHMLFLQ 733
                        67799************77......6666666777776666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.6E-266156IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.804683732IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-4696740IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 888 aa     Download sequence    Send to blast
MAVGDALRRL CEEVGWSYAV FWKAIGAADP VHLVWEDGSC GHASCYTGSD APEAGCEPGT  60
SVCTLVGKVM ASQIHVIGEG TIGRAAFTGN HQWIVHDPAT ASDHNLRPEV VAEMNHQFAA  120
GIQTIAIIPV LPRGVLQLGA TSVVVENTNL VLQYKKLCSQ LNNRSSMASS SSVKNDLNPK  180
VQSHPLNGPT SIYPADTRSK FFSGSPMSYQ QCYGPDGTTV SSSILTNMGS NASMLMVAQR  240
NAQVGKEHIL YAPDMRFRLQ NPYCDRRVES NTQSSVVSSG FISSISASME RHPWMTNSQQ  300
LEQGNTGEPS DLRNVLLKSL AYRHPLFNDN TNMVLVHGKG QVPGFVNGHG GFDFLPEGTM  360
VFKGNLYGST ANQILDQRCS STSEMSGHRP TISYKMPQST QCVRKTESPK RETCETSAAL  420
SSGSDIQVSG GLKTVISQEN NMSSSDLISP KKPNEVHAPT GAIVKAVKNM DSRRLPDISN  480
ERSPPLRMDA AAESDLFDMF DSEVHHLCRN VDNDLTCKAA KPENSNRDVP ESSVRLGSSS  540
SFNSVDDKFP YSGIFSLTDT DQLLDAVVSN VNPGGKQISG DSTSCKTSAA DIPTTSYCRL  600
KEPKQSESSS PLLIKNELAV SNFVKQSSFQ EKAEDGCLSQ NNAIQKSQIR LWIENGQNMK  660
CESASASNSK GVDMSSKASR KRSRPGENPK PRPKDRQLIQ DRIKELRELV PNGAKCSIDA  720
LLEKTIKHML FLQSVTKHAD NLKDSNKSDI LGGENGPLKD YFEGGATWAL DVGSRSMTCP  780
IIVEDLERPR QMLVEMLCED RGIFLEIADF IKGLGLTILR GVMEARKNKI WARFTVEANR  840
NVTRMEIFLS LMRMLEPSCG AGENSNNNIK MPLGIVQYPI IPATGHLR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.994870.0embryo| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G069408
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G069408_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008674453.10.0transcription factor LHW isoform X1
TrEMBLA0A1D6MZR60.0A0A1D6MZR6_MAIZE; Transcription factor LHW
STRINGGRMZM2G069408_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Representative plantOGRP152168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.13e-50conserved peptide upstream open reading frame 7