PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G069028_P03

Common Name

ns1

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

WOX

Protein Properties

Length: 193aa MW: 21485.4 Da PI: 11.0046

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G069028_P03	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.1	4.7e-21	6	66	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+eql +Lee++++ r+p+a+e+++++++l +++ ++V++WFqN++a+e++ GRMZM2G069028_P03 6 STRWCPTPEQLMILEEMYRSgVRTPNAAEIQQITAHLayygRIEGKNVFYWFQNHKARERQ 66 58***************99************************************97 PP
2	Wus_type_Homeobox	121.8	2.8e-39	5	67	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++tRW+PtpeQ++iLee+y+sG+rtPn++eiq+ita+L+ yG+ie+kNVfyWFQN+kaRerq+ GRMZM2G069028_P03 5 PSTRWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNHKARERQR 67 689***********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.463	2	67	IPR001356	Homeobox domain
SMART	SM00389	6.8E-6	4	71	IPR001356	Homeobox domain
CDD	cd00086	2.10E-4	5	60	No hit	No description
Pfam	PF00046	1.0E-18	6	66	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.13E-12	7	67	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.7E-8	8	66	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007275	Biological Process	multicellular organism development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MPQTPSTRWC PTPEQLMILE EMYRSGVRTP NAAEIQQITA HLAYYGRIEG KNVFYWFQNH 60 KARERQRLRR RLCARHQQQY AQQQATAAAP ASSPNSSATV PSLAAGGSSA GVHPAVMQLH 120 HHQHPYATNF MPHQLVVVPM EVELGYTTAA AAISWRSGRP QMQWSTATPA AVRHRAALTR 180 VARSSCRHAA AVL

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G069028

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in tissues enriched for shoot meristems and young lateral organ primordia. First expressed in lateral domains of shoot meristems. It is then expressed in the margins of young lateral organ primordia. Not expressed in roots, seedling leaves or fully expanded coleoptiles. Also expressed in vegetative shoot apices (five leaf primordia and the SAM) and in the male inflorescence. Expressed at low level in the female inflorescence. {ECO:0000269\|PubMed:15169755}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in leaf formation. {ECO:0000269\|PubMed:15169755}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G069028_P03

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ536578	0.0	AJ536578.1 Zea mays mRNA for homeodomain transcription factor (prs gene).
GenBank	BT066120	0.0	BT066120.1 Zea mays full-length cDNA clone ZM_BFb0350F05 mRNA, complete cds.
GenBank	JX469942	0.0	JX469942.1 Zea mays subsp. mays clone UT3202 HB-type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001105160.1	1e-70	WUSCHEL-related homeobox 3A
Swissprot	Q70UV1	1e-71	WOX3A_MAIZE; WUSCHEL-related homeobox 3A
TrEMBL	A0A3L6G2S1	3e-69	A0A3L6G2S1_MAIZE; WUSCHEL-related homeobox 3A
TrEMBL	C0PCV1	3e-69	C0PCV1_MAIZE; WUSCHEL-related homeobox 3A
TrEMBL	K4JBS6	3e-69	K4JBS6_MAIZE; HB-type transcription factor (Fragment)
STRING	GRMZM2G069028_P01	4e-70	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	5e-36	WOX family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G069028_P03

Publications ? help Back to Top
Scanlon MJ NARROW SHEATH1 functions from two meristematic foci during founder-cell recruitment in maize leaf development. Development, 2000. 127(21): p. 4573-85 [PMID:11023861]