PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G069009_P01
Common NameLOC100281498
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 451aa    MW: 48436.5 Da    PI: 7.9064
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G069009_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.38.3e-114470127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                       ++++ C +++rtG C yG+rC+++H++
  GRMZM2G069009_P01 44 PGEADCAYYLRTGACGYGERCRYNHPR 70
                       57899********************96 PP
2zf-CCCH39.97e-1392118127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++lC ++a++GtCk+G++CkF H++
  GRMZM2G069009_P01  92 PGQPLCEYYAKNGTCKFGSNCKFDHPR 118
                        589**********************96 PP
3zf-CCCH39.59.5e-13138162327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C+++++tG+Ck+G++CkF+H++
  GRMZM2G069009_P01 138 EKECSYYMKTGHCKFGATCKFHHPE 162
                        689********************96 PP
4zf-CCCH39.97.1e-13290316127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C ++++tGtCkyG+ Ck++H++
  GRMZM2G069009_P01 290 PGQPECEHYMKTGTCKYGAACKYHHPQ 316
                        5789*********************97 PP
5zf-CCCH26.51.1e-08338362327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +C ++a  G+Ck+G++CkF H++
  GRMZM2G069009_P01 338 SQPCAYYAHHGYCKFGPTCKFDHPM 362
                        679********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.0424371IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-64370IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-84570IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-64771IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-54970IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.91591119IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-791118IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-1093118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-694119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-696119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.267135163IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-6135162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6137162IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-10138162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4141161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859289317IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6289316IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-10291316IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5293316IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4295314IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.624335363IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-5335362IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5337363IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-6337362IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MEPYAAAKSG GADAGTGTGL EDSMRRLGLG DDGEAGEEKL PERPGEADCA YYLRTGACGY  60
GERCRYNHPR DRPAPVNGVG KTAVTVEYPE RPGQPLCEYY AKNGTCKFGS NCKFDHPREG  120
GFVPVTLNSG GFPLRLGEKE CSYYMKTGHC KFGATCKFHH PELGFLTETP GMYPPVQPPP  180
ISSSHPYPHL ANWQMGRPPV VPGSFLPGSY PPMVLPHTVI PMQGWNPYVP PMNQVTPAGG  240
QQAVPVGASY GLSHQGPTSA MTYGSHYAQL YSSSGTSSSN IQEYAFPERP GQPECEHYMK  300
TGTCKYGAAC KYHHPQYFSG PKSNCILSPL GLPLRPGSQP CAYYAHHGYC KFGPTCKFDH  360
PMGTPNYSIS TSSLTDVPIA PYPQSFPVTP MPSYLPSSDL RPQYTQVKDS SANPPPSPGT  420
TYGPVGSISK VYAPHTLIRS PASAAAGMQA S
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.394840.0cell culture| meristem| ovary| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G069009
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G069009_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0637610.0BT063761.1 Zea mays full-length cDNA clone ZM_BFc0104J02 mRNA, complete cds.
GenBankBT0678680.0BT067868.1 Zea mays full-length cDNA clone ZM_BFc0176C01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354949.10.0uncharacterized protein LOC100281498
SwissprotQ5NAV30.0C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLC0P6420.0C0P642_MAIZE; Zinc finger CCCH domain-containing protein 58
TrEMBLK0DCN60.0K0DCN6_MAIZE; C3H12 C3H type transcription factor (Fragment)
STRINGGRMZM2G069009_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Representative plantOGRP28651131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-103C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]