PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G068973_P01
Common NameIDP275, ZEAMMB73_955199, Zma001259
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 308aa    MW: 34512 Da    PI: 8.9735
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G068973_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.32.5e-52201471128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeelvv+yL++kv+ ++l++  +i+evd+yk++PwdLp+k+  ++kewyfF++rd+ky++g+r+nra+ +gyWkatg dk++
  GRMZM2G068973_P01  20 LPPGFRFHPTDEELVVHYLCRKVACQQLPV-PIIAEVDLYKFDPWDLPEKALFGRKEWYFFTPRDRKYPNGSRPNRAAGRGYWKATGADKPI 110
                        79****************************.88***************8877899************************************* PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          k +g + g+kk Lvfy+g+ap+g ktdW+mheyrl
  GRMZM2G068973_P01 111 APKgGGGAAGIKKALVFYSGKAPRGFKTDWIMHEYRL 147
                        *9977889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-6316173IPR003441NAC domain
PROSITE profilePS5100560.93520173IPR003441NAC domain
PfamPF023657.2E-2721147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MAMVAAQGGG RRDAEAELNL PPGFRFHPTD EELVVHYLCR KVACQQLPVP IIAEVDLYKF  60
DPWDLPEKAL FGRKEWYFFT PRDRKYPNGS RPNRAAGRGY WKATGADKPI APKGGGGAAG  120
IKKALVFYSG KAPRGFKTDW IMHEYRLADA DRAPGKKGSR KLDEWVLCRL YNKKNNWEKV  180
KAEEPEAAAP FRHQQGAAED SMSDSFQTHD SDIDNNAFGM QNGFGNMVHG QTMTMRNGIG  240
SVARTVKEDN YWFTDLNLDD LQAPYNVTHV LNPNPVQTMN LAAGQGHGYL QSMSSPSTKM  300
WQTILPPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-93121797174Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.947670.0cell culture| leaf| ovary| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G068973
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, leaf blades and callus. Weakly expressed in developing flowers. {ECO:0000269|PubMed:10660065}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G068973_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6704440.0KM670444.1 Zea mays NAC transcription factor (Zma001259) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001345024.10.0uncharacterized protein LOC100381829
SwissprotQ52QH41e-154NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLK0DFG40.0K0DFG4_MAIZE; NAC23 NAC type transcription factor (Fragment)
TrEMBLK7W3P20.0K7W3P2_MAIZE; NAC domain-containing protein 2
STRINGGRMZM2G068973_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53893761
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.13e-74NAC domain containing protein 32
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Lu M,Sun QP,Zhang DF,Wang TY,Pan JB
    Identification of 7 stress-related NAC transcription factor members in maize (Zea mays L.) and characterization of the expression pattern of these genes.
    Biochem. Biophys. Res. Commun., 2015. 462(2): p. 144-50
    [PMID:25937463]
  7. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]