PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G068967_P01 | ||||||||
Common Name | EREB97, Zm.101306 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 222aa MW: 22931.2 Da PI: 10.2255 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.3 | 1.1e-19 | 17 | 67 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr ++ +gr++AeIrdp r +r++lg+f+tae Aa+a++aa++ ++g GRMZM2G068967_P01 17 PRYRGVRKRP-WGRYAAEIRDP---A-RkARVWLGTFDTAEAAARAYDAAALHFRG 67 68********.**********8...2.35***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.67E-20 | 17 | 76 | No hit | No description |
Pfam | PF00847 | 7.7E-14 | 17 | 67 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.1E-36 | 18 | 81 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-32 | 18 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-22 | 18 | 76 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.961 | 18 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-11 | 19 | 30 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-11 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MAPKNALPAA SGMTLEPRYR GVRKRPWGRY AAEIRDPARK ARVWLGTFDT AEAAARAYDA 60 AALHFRGPKA KTNFPVAFAT ATATDTRALP LPLRLPLPPP PPPKKLAVSP SGSTVESSSR 120 DSPAAPAPAP SLDLSLGMPP MVAAQPFLFL DPRLAVTVAV AAPVPRRPTA AAAGAGASKQ 180 AAYSCCREDE QSDTGSSSSV VDASPAVGVG FDLNMPPPGE VA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-21 | 19 | 76 | 6 | 64 | ATERF1 |
3gcc_A | 7e-21 | 19 | 76 | 6 | 64 | ATERF1 |
5wx9_A | 8e-21 | 18 | 84 | 14 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.101306 | 0.0 | ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G068967 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G068967_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT085709 | 0.0 | BT085709.1 Zea mays full-length cDNA clone ZM_BFc0050D08 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147685.2 | 1e-153 | uncharacterized protein LOC100281295 | ||||
TrEMBL | C4J4G2 | 1e-152 | C4J4G2_MAIZE; AP2-EREBP transcription factor | ||||
STRING | GRMZM2G068967_P01 | 1e-152 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11853 | 25 | 37 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 6e-24 | ethylene response factor 7 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G068967_P01 |