PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G068710_P08 | ||||||||
Common Name | C2H35, TIDP3029, ZEAMMB73_417749 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 467aa MW: 51053.2 Da PI: 6.9419 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.2 | 7.6e-07 | 208 | 229 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H GRMZM2G068710_P08 208 FCTICGKGFKRDANLRMHMRGH 229 6*******************98 PP | |||||||
2 | zf-C2H2 | 11 | 0.0013 | 328 | 342 | 6 | 20 |
TTEEESSHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHi 20 Cg+sFsrk+ L H GRMZM2G068710_P08 328 CGTSFSRKDKLFAHV 342 **************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.32E-5 | 206 | 231 | No hit | No description |
SMART | SM00355 | 0.0026 | 207 | 229 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.03 | 207 | 234 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12874 | 9.2E-4 | 208 | 229 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-5 | 208 | 233 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 209 | 229 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 57 | 257 | 290 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 110 | 295 | 317 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006486 | Biological Process | protein glycosylation | ||||
GO:0010044 | Biological Process | response to aluminum ion | ||||
GO:0043620 | Biological Process | regulation of DNA-templated transcription in response to stress | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008417 | Molecular Function | fucosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 467 aa Download sequence Send to blast |
MDNHIHSQPA ANLYYQFGMG TEQQYPPPFA SPPSTNIPHM DWNPATMLDN LTFIEEKIQQ 60 VKDVIRTMVD NAGQVQVQCH HQAGELLAQK QKQQVVNADL TCLIVQLIST AGSLLPSLKN 120 SSFLSHPHPA GHVDMANHVG PSSSLVPNAM TVSEDYEELF KGWTDGGIEV DDDGVLVEEQ 180 EITKDGDSLS YELLQLEEDE ILAPHTHFCT ICGKGFKRDA NLRMHMRGHG DEYKSPAALA 240 KPPRDPGAEQ EPAKRRYSCP FAGCKRNKLH KSFQPLKTIL CVKNHYRRSH CEKSHTCGRC 300 HAKKFSIVAD LRTHEKHCGR RDRWVCSCGT SFSRKDKLFA HVALFQGHTP ALSSPLEEEP 360 PKACSDQHQT GRAGSRREPA KVPAGSVGGG SGSSFVWGAS SSGENSALDI KGFVDGCSGD 420 FLSTANFGSF NLSFGPADGF TGEPSSGGSF SMLPPEHFQS AQKKGQN |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.4464 | 0.0 | cell culture| ear| meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G068710 |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:19880795}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that regulates the expression of genes involved in aluminum (Al) tolerance. Binds to the promoter of STAR1 and regulates transcript expression of STAR1 STAR2 and ART1 required for Al tolerance. {ECO:0000269|PubMed:19880795}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G068710_P08 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU961715 | 0.0 | EU961715.1 Zea mays clone 237828 TRANSPARENT TESTA 1 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001149015.1 | 0.0 | uncharacterized protein LOC100282635 | ||||
Refseq | XP_008661942.1 | 0.0 | uncharacterized protein LOC100282635 isoform X1 | ||||
Refseq | XP_008661943.1 | 0.0 | uncharacterized protein LOC100282635 isoform X1 | ||||
Refseq | XP_008661944.1 | 0.0 | uncharacterized protein LOC100282635 isoform X1 | ||||
Refseq | XP_008661945.1 | 0.0 | uncharacterized protein LOC100282635 isoform X1 | ||||
Refseq | XP_023156907.1 | 0.0 | uncharacterized protein LOC100282635 isoform X1 | ||||
Swissprot | Q2QX40 | 1e-136 | ART1_ORYSJ; Zinc finger protein STAR3 | ||||
TrEMBL | B6T9Q0 | 0.0 | B6T9Q0_MAIZE; C2H2 transcription factor | ||||
STRING | GRMZM2G068710_P07 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G34370.2 | 1e-118 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G068710_P08 |
Entrez Gene | 100282635 |