PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G068710_P07
Common NameC2H35, TIDP3029, ZEAMMB73_417749
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 467aa    MW: 51053.2 Da    PI: 6.9419
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G068710_P07genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.27.6e-07208229223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         C++Cgk F+r  nL+ H+r H
  GRMZM2G068710_P07 208 FCTICGKGFKRDANLRMHMRGH 229
                        6*******************98 PP

2zf-C2H2110.0013328342620
                        TTEEESSHHHHHHHH CS
            zf-C2H2   6 CgksFsrksnLkrHi 20 
                        Cg+sFsrk+ L  H 
  GRMZM2G068710_P07 328 CGTSFSRKDKLFAHV 342
                        **************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.32E-5206231No hitNo description
SMARTSM003550.0026207229IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.03207234IPR007087Zinc finger, C2H2
PfamPF128749.2E-4208229No hitNo description
Gene3DG3DSA:3.30.160.601.2E-5208233IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280209229IPR007087Zinc finger, C2H2
SMARTSM0035557257290IPR015880Zinc finger, C2H2-like
SMARTSM00355110295317IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006486Biological Processprotein glycosylation
GO:0010044Biological Processresponse to aluminum ion
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003676Molecular Functionnucleic acid binding
GO:0008417Molecular Functionfucosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MDNHIHSQPA ANLYYQFGMG TEQQYPPPFA SPPSTNIPHM DWNPATMLDN LTFIEEKIQQ  60
VKDVIRTMVD NAGQVQVQCH HQAGELLAQK QKQQVVNADL TCLIVQLIST AGSLLPSLKN  120
SSFLSHPHPA GHVDMANHVG PSSSLVPNAM TVSEDYEELF KGWTDGGIEV DDDGVLVEEQ  180
EITKDGDSLS YELLQLEEDE ILAPHTHFCT ICGKGFKRDA NLRMHMRGHG DEYKSPAALA  240
KPPRDPGAEQ EPAKRRYSCP FAGCKRNKLH KSFQPLKTIL CVKNHYRRSH CEKSHTCGRC  300
HAKKFSIVAD LRTHEKHCGR RDRWVCSCGT SFSRKDKLFA HVALFQGHTP ALSSPLEEEP  360
PKACSDQHQT GRAGSRREPA KVPAGSVGGG SGSSFVWGAS SSGENSALDI KGFVDGCSGD  420
FLSTANFGSF NLSFGPADGF TGEPSSGGSF SMLPPEHFQS AQKKGQN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.44640.0cell culture| ear| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G068710
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:19880795}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that regulates the expression of genes involved in aluminum (Al) tolerance. Binds to the promoter of STAR1 and regulates transcript expression of STAR1 STAR2 and ART1 required for Al tolerance. {ECO:0000269|PubMed:19880795}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G068710_P07
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9617150.0EU961715.1 Zea mays clone 237828 TRANSPARENT TESTA 1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149015.10.0uncharacterized protein LOC100282635
RefseqXP_008661942.10.0uncharacterized protein LOC100282635 isoform X1
RefseqXP_008661943.10.0uncharacterized protein LOC100282635 isoform X1
RefseqXP_008661944.10.0uncharacterized protein LOC100282635 isoform X1
RefseqXP_008661945.10.0uncharacterized protein LOC100282635 isoform X1
RefseqXP_023156907.10.0uncharacterized protein LOC100282635 isoform X1
SwissprotQ2QX401e-136ART1_ORYSJ; Zinc finger protein STAR3
TrEMBLB6T9Q00.0B6T9Q0_MAIZE; C2H2 transcription factor
STRINGGRMZM2G068710_P070.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-118C2H2 family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  2. Xia J,Yamaji N,Kasai T,Ma JF
    Plasma membrane-localized transporter for aluminum in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2010. 107(43): p. 18381-5
    [PMID:20937890]
  3. Tsutsui T,Yamaji N,Feng Ma J
    Identification of a cis-acting element of ART1, a C2H2-type zinc-finger transcription factor for aluminum tolerance in rice.
    Plant Physiol., 2011. 156(2): p. 925-31
    [PMID:21502187]
  4. Famoso AN, et al.
    Genetic architecture of aluminum tolerance in rice (Oryza sativa) determined through genome-wide association analysis and QTL mapping.
    PLoS Genet., 2011. 7(8): p. e1002221
    [PMID:21829395]
  5. Yokosho K,Yamaji N,Ma JF
    An Al-inducible MATE gene is involved in external detoxification of Al in rice.
    Plant J., 2011. 68(6): p. 1061-9
    [PMID:21880027]
  6. Huang CF,Yamaji N,Chen Z,Ma JF
    A tonoplast-localized half-size ABC transporter is required for internal detoxification of aluminum in rice.
    Plant J., 2012. 69(5): p. 857-67
    [PMID:22035218]
  7. Chen ZC,Yamaji N,Motoyama R,Nagamura Y,Ma JF
    Up-regulation of a magnesium transporter gene OsMGT1 is required for conferring aluminum tolerance in rice.
    Plant Physiol., 2012. 159(4): p. 1624-33
    [PMID:22732245]
  8. Tsutsui T, et al.
    Comparative genome-wide transcriptional analysis of Al-responsive genes reveals novel Al tolerance mechanisms in rice.
    PLoS ONE, 2012. 7(10): p. e48197
    [PMID:23110212]
  9. Chen ZC, et al.
    Adaptation to acidic soil is achieved by increased numbers of cis-acting elements regulating ALMT1 expression in Holcus lanatus.
    Plant J., 2013. 76(1): p. 10-23
    [PMID:23773148]
  10. Xia J,Yamaji N,Ma JF
    A plasma membrane-localized small peptide is involved in rice aluminum tolerance.
    Plant J., 2013. 76(2): p. 345-55
    [PMID:23888867]
  11. Yokosho K,Yamaji N,Fujii-Kashino M,Ma JF
    Functional Analysis of a MATE Gene OsFRDL2 Revealed its Involvement in Al-Induced Secretion of Citrate, but a Lower Contribution to Al Tolerance in Rice.
    Plant Cell Physiol., 2016. 57(5): p. 976-85
    [PMID:26872836]
  12. Che J,Yamaji N,Shen RF,Ma JF
    An Al-inducible expansin gene, OsEXPA10 is involved in root cell elongation of rice.
    Plant J., 2016. 88(1): p. 132-142
    [PMID:27302336]
  13. Yokosho K,Yamaji N,Fujii-Kashino M,Ma JF
    Retrotransposon-Mediated Aluminum Tolerance through Enhanced Expression of the Citrate Transporter OsFRDL4.
    Plant Physiol., 2016. 172(4): p. 2327-2336
    [PMID:27744299]