PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G068330_P04
Common NameLOC103652837, ZEAMMB73_535927, ZHD1, Zm.26694
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ZF-HD
Protein Properties Length: 382aa    MW: 39774.9 Da    PI: 8.0922
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G068330_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.66.3e-3379135259
        ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                        ++v+Y+eClkNhAa++Gg+a+DGCgEfmps geeg+ +alkC+ACgCHRnFHR+ev++
  GRMZM2G068330_P04  79 STVKYRECLKNHAAAIGGNATDGCGEFMPS-GEEGSLEALKCSACGCHRNFHRKEVDD 135
                        589**************************9.999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.4E-2981133IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2482134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-3082133IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.73583132IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466899.9E-21242314IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-30246315IPR009057Homeodomain-like
TIGRFAMsTIGR015657.4E-27255311IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDLSGTQGEL AIPMHANVAS PYGAGVGGHV LQLHRDHGSN NGQSPAPPLP PPPAAAEETE  60
SSAKKRGPAA GAGGGGGSST VKYRECLKNH AAAIGGNATD GCGEFMPSGE EGSLEALKCS  120
ACGCHRNFHR KEVDDEDDDM YGAAEGFSGL GLGLGLGHGH GHRAARRLLA PAMAHPHHKS  180
GGGGLLISGA DPYAAYASAR ALPPALPPPP GHAHHHHQYV MPLNMMHTSE SDDMEGGRGG  240
CGDAARGSGG SSSSRKRFRT KFTPEQKARM LEFAERVGWR LQKLDDGMVQ AFCQEIGVKR  300
RVLKVWMHNN KHNLATKRLE ASPAQEQAMA GMASPPPPPP PPQLHLPLQM PAGVMPPPPP  360
PPQAGSSCHR GGPGSPLPLK LE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A4e-242553131775ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.266940.0ear| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G068330
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G068330_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280450.0KJ728045.1 Zea mays clone pUT6191 ZF-HD transcription factor (ZHD1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678039.10.0zinc-finger homeodomain protein 4 isoform X1
SwissprotQ53N875e-95ZHD4_ORYSJ; Zinc-finger homeodomain protein 4
TrEMBLK7TRK30.0K7TRK3_MAIZE; Putative homeobox DNA-binding domain superfamily protein
STRINGGRMZM2G068330_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.25e-54homeobox protein 31