PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G068330_P02
Common NameLOC103652837, ZEAMMB73_535927, ZHD1, Zm.26694
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ZF-HD
Protein Properties Length: 420aa    MW: 43813.4 Da    PI: 7.9102
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G068330_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.47.2e-33117173259
        ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                        ++v+Y+eClkNhAa++Gg+a+DGCgEfmps geeg+ +alkC+ACgCHRnFHR+ev++
  GRMZM2G068330_P02 117 STVKYRECLKNHAAAIGGNATDGCGEFMPS-GEEGSLEALKCSACGCHRNFHRKEVDD 173
                        589**************************9.999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.6E-29119171IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-30120171IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-24120172IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.735121170IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.18E-20280351IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-30284353IPR009057Homeodomain-like
TIGRFAMsTIGR015658.5E-27293349IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MVSIVPLQRT EASAAPARSI FSLERRLREE DDGSGPGGMD LSGTQGELAI PMHANVASPY  60
GAGVGGHVLQ LHRDHGSNNG QSPAPPLPPP PAAAEETESS AKKRGPAAGA GGGGGSSTVK  120
YRECLKNHAA AIGGNATDGC GEFMPSGEEG SLEALKCSAC GCHRNFHRKE VDDEDDDMYG  180
AAEGFSGLGL GLGLGHGHGH RAARRLLAPA MAHPHHKSGG GGLLISGADP YAAYASARAL  240
PPALPPPPGH AHHHHQYVMP LNMMHTSESD DMEGGRGGCG DAARGSGGSS SSRKRFRTKF  300
TPEQKARMLE FAERVGWRLQ KLDDGMVQAF CQEIGVKRRV LKVWMHNNKH NLATKRLEAS  360
PAQEQAMAGM ASPPPPPPPP QLHLPLQMPA GVMPPPPPPP QAGSSCHRGG PGSPLPLKLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A9e-242933511775ZF-HD homeobox family protein
1wh7_A9e-242923511675ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.266940.0ear| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G068330
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G068330_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280450.0KJ728045.1 Zea mays clone pUT6191 ZF-HD transcription factor (ZHD1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678039.10.0zinc-finger homeodomain protein 4 isoform X1
SwissprotQ53N872e-95ZHD4_ORYSJ; Zinc-finger homeodomain protein 4
TrEMBLK7TRK30.0K7TRK3_MAIZE; Putative homeobox DNA-binding domain superfamily protein
STRINGGRMZM2G068330_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.29e-54homeobox protein 31