PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G067743_P03
Common NameGRF11, TIDP3466, ZEAMMB73_405332, Zm.1207
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRF
Protein Properties Length: 318aa    MW: 34457.5 Da    PI: 9.3526
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G067743_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.52.7e-2485128144
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                        d+epgrCrRtDGKkWRCsr++ +++k+CE+H+hrg+srsrk++e
  GRMZM2G067743_P03  85 DPEPGRCRRTDGKKWRCSREAHGDSKYCEKHIHRGKSRSRKPVE 128
                        79***************************************998 PP
2QLQ59.78.5e-211246236
                QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                        FTa+Q+q+L++Q+l++Ky+a+++PvP++L+++++
  GRMZM2G067743_P03 12 LFTASQWQELEHQALIFKYMASGAPVPHDLVLPLR 46
                       5*******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.5E-91147IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.8751247IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.3E-151345IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.59685129IPR014977WRC domain
PfamPF088791.1E-1986128IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006340anatomyadult vascular leaf
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MMLSGHGGGR RLFTASQWQE LEHQALIFKY MASGAPVPHD LVLPLRLATG VDTAPSLAFP  60
PQPSPSLAYW GCYGAGAPFG RKAEDPEPGR CRRTDGKKWR CSREAHGDSK YCEKHIHRGK  120
SRSRKPVEVT SPAAYRPSAF SISPPRAADA PPPPPGLGHP QQQHLRHGAL SPAGRAHAAG  180
ALQLHLDSSL HAASPPPSYH RYAHSHAHYT PPPPPSLYDY GQSKELREAA ELRRRHFHAL  240
GADLSLDKPL ADAGAAEKPL RRFFDEWPRE RGDTRPSWAG AEDATQLSIS IPAASPSSDH  300
AASAAARCHN DGSDRCIS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.12070.0ear| meristem| ovary| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G067743
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G067743_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0400710.0BT040071.1 Zea mays full-length cDNA clone ZM_BFc0063G19 mRNA, complete cds.
GenBankBT0415400.0BT041540.1 Zea mays full-length cDNA clone ZM_BFc0173L15 mRNA, complete cds.
GenBankBT0553900.0BT055390.1 Zea mays full-length cDNA clone ZM_BFb0108H20 mRNA, complete cds.
GenBankEF5158500.0EF515850.1 Zea mays putative growth-regulating factor 11 (GRF11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001106029.10.0putative growth-regulating factor 11
SwissprotQ6AWY72e-88GRF2_ORYSJ; Growth-regulating factor 2
TrEMBLA0A1X7YH510.0A0A1X7YH51_MAIZE; Uncharacterized protein
STRINGGRMZM2G067743_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139922527
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.19e-42growth-regulating factor 5