PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G067743_P02 | ||||||||
Common Name | ZEAMMB73_405332, Zm.1207 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GRF | ||||||||
Protein Properties | Length: 298aa MW: 31706.6 Da PI: 12.4131 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 32.8 | 1.2e-10 | 85 | 103 | 1 | 19 |
WRC 1 daepgrCrRtDGKkWRCsr 19 d+epgrCrRtDGKkWRCsr GRMZM2G067743_P02 85 DPEPGRCRRTDGKKWRCSR 103 79****************9 PP | |||||||
2 | QLQ | 59.8 | 7.7e-21 | 12 | 46 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 FTa+Q+q+L++Q+l++Ky+a+++PvP++L+++++ GRMZM2G067743_P02 12 LFTASQWQELEHQALIFKYMASGAPVPHDLVLPLR 46 5*******************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.5E-9 | 11 | 47 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.875 | 12 | 47 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.2E-15 | 13 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 14.361 | 85 | 134 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.6E-7 | 86 | 103 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MMLSGHGGGR RLFTASQWQE LEHQALIFKY MASGAPVPHD LVLPLRLATG VDTAPSLAFP 60 PQPSPSLAYW GCYGAGAPFG RKAEDPEPGR CRRTDGKKWR CSRGGPRRLQ VLREAHPPRE 120 EPFKKACGSD LPRRLPPVRV LHLAASRGRR AAAAAGPRPP AAAASPPRRS LSSRPRPRRW 180 RSPAPPRLEP ARGVAAAVLP QVRPLPRSLH AAAAAVALRL RAVQGASGGG GAQAAALPRA 240 RGRPEPRQAA GRRRGRGEAP AAFLRRVAAG ERRHEAVVGG GGGRDAALHL HPRGFALL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.1207 | 0.0 | ear| meristem| ovary| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G067743 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G067743_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040071 | 0.0 | BT040071.1 Zea mays full-length cDNA clone ZM_BFc0063G19 mRNA, complete cds. | |||
GenBank | BT041540 | 0.0 | BT041540.1 Zea mays full-length cDNA clone ZM_BFc0173L15 mRNA, complete cds. | |||
GenBank | BT055390 | 0.0 | BT055390.1 Zea mays full-length cDNA clone ZM_BFb0108H20 mRNA, complete cds. | |||
GenBank | EF515850 | 0.0 | EF515850.1 Zea mays putative growth-regulating factor 11 (GRF11) mRNA, complete cds. | |||
GenBank | JX469985 | 0.0 | JX469985.1 Zea mays subsp. mays clone UT3345 GRF-type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B4FC57 | 1e-117 | B4FC57_MAIZE; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 1e-27 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G067743_P02 |