PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G067743_P02
Common NameZEAMMB73_405332, Zm.1207
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRF
Protein Properties Length: 298aa    MW: 31706.6 Da    PI: 12.4131
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G067743_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC32.81.2e-1085103119
                WRC   1 daepgrCrRtDGKkWRCsr 19 
                        d+epgrCrRtDGKkWRCsr
  GRMZM2G067743_P02  85 DPEPGRCRRTDGKKWRCSR 103
                        79****************9 PP

2QLQ59.87.7e-211246236
                QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                        FTa+Q+q+L++Q+l++Ky+a+++PvP++L+++++
  GRMZM2G067743_P02 12 LFTASQWQELEHQALIFKYMASGAPVPHDLVLPLR 46
                       5*******************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.5E-91147IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.8751247IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.2E-151345IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166714.36185134IPR014977WRC domain
PfamPF088792.6E-786103IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MMLSGHGGGR RLFTASQWQE LEHQALIFKY MASGAPVPHD LVLPLRLATG VDTAPSLAFP  60
PQPSPSLAYW GCYGAGAPFG RKAEDPEPGR CRRTDGKKWR CSRGGPRRLQ VLREAHPPRE  120
EPFKKACGSD LPRRLPPVRV LHLAASRGRR AAAAAGPRPP AAAASPPRRS LSSRPRPRRW  180
RSPAPPRLEP ARGVAAAVLP QVRPLPRSLH AAAAAVALRL RAVQGASGGG GAQAAALPRA  240
RGRPEPRQAA GRRRGRGEAP AAFLRRVAAG ERRHEAVVGG GGGRDAALHL HPRGFALL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.12070.0ear| meristem| ovary| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G067743
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G067743_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0400710.0BT040071.1 Zea mays full-length cDNA clone ZM_BFc0063G19 mRNA, complete cds.
GenBankBT0415400.0BT041540.1 Zea mays full-length cDNA clone ZM_BFc0173L15 mRNA, complete cds.
GenBankBT0553900.0BT055390.1 Zea mays full-length cDNA clone ZM_BFb0108H20 mRNA, complete cds.
GenBankEF5158500.0EF515850.1 Zea mays putative growth-regulating factor 11 (GRF11) mRNA, complete cds.
GenBankJX4699850.0JX469985.1 Zea mays subsp. mays clone UT3345 GRF-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB4FC571e-117B4FC57_MAIZE; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-27growth-regulating factor 5