PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G067624_P02
Common Namepco133434
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SBP
Protein Properties Length: 206aa    MW: 21040.2 Da    PI: 10.0701
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G067624_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP120.11e-37110185277
                        -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                        Cqve+C+ad+   k+y+rrhkvC++h ka+vvl++gl+qrfCqqCsrfhels+fD++krsCr rLa+hnerrr++ 
  GRMZM2G067624_P02 110 CQVERCSADMGVEKRYNRRHKVCDAHRKASVVLLAGLRQRFCQQCSRFHELSHFDDTKRSCRLRLAGHNERRRRNP 185
                        *************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.0E-30104171IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.316107184IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.94E-34108187IPR004333Transcription factor, SBP-box
PfamPF031101.2E-28110183IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MPDSSSSAGT GGMAPSSSAA ASIAALAAAA ASGDGSDDSG AANNNGALPL PLPPPHGVED  60
NNSPAELAGA GGTSRAVARR VAAAGASPAA AARRGAAVNA QAAGGAGPSC QVERCSADMG  120
VEKRYNRRHK VCDAHRKASV VLLAGLRQRF CQQCSRFHEL SHFDDTKRSC RLRLAGHNER  180
RRRNPAEAQD QHGGRGDPGS HHLQIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-33104183184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.948700.0ear| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G067624
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00634PBMTransfer from PK22320.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G067624_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0682920.0BT068292.2 Zea mays full-length cDNA clone ZM_BFb0099E12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150236.21e-144SBP-transcription factor 29
TrEMBLA0A1D6ICF41e-142A0A1D6ICF4_MAIZE; SBP domain containing protein
STRINGGRMZM2G067624_P021e-143(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85243248
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.24e-34squamosa promoter binding protein-like 4