PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G065896_P01
Common NameLOC100281895, ZIM2
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 278aa    MW: 29770.8 Da    PI: 8.3962
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G065896_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.72.1e-15174210135
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C+nCg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  GRMZM2G065896_P01 174 CQNCGISSrlTPAMRRGPAGPRSLCNACGLMWANKGT 210
                        **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.0034176IPR010399Tify domain
SMARTSM009791.3E-84176IPR010399Tify domain
PfamPF062007.0E-124375IPR010399Tify domain
PfamPF062031.7E-15103143IPR010402CCT domain
PROSITE profilePS5101713.473103145IPR010402CCT domain
SMARTSM004018.4E-11168222IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.14E-10171225No hitNo description
Gene3DG3DSA:3.30.50.108.2E-14172212IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.98E-13174220No hitNo description
PROSITE patternPS003440174201IPR000679Zinc finger, GATA-type
PfamPF003204.0E-13174210IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAAEPAAADH DLRPPLADGA AAAGVGAASL AAAAGAAEAL MSATSEQLTL VYQGDVYVFD  60
PVPPQKVQAV LLVLGGYEVP PGLVNMAVSS ANDEKNTTVA ARRVASLMRF REKRKERCFD  120
KRIRYSVRKE VAQKMKRRKG QFAGRSDFGD GACSSAACGS PANGEDDHFR ETHCQNCGIS  180
SRLTPAMRRG PAGPRSLCNA CGLMWANKGT LRSPLNAPKM TQQLLANPCN MVDTDDKNSN  240
VLPVEHNQAT PKTDSMMPKE EQKLDIRLPT EEDTKAVS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1231780.0cell culture| leaf
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G065896
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G065896_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU5128690.0KU512869.1 Zea mays TIFY18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148287.10.0GATA transcription factor 25
SwissprotQ0DNU11e-133GAT19_ORYSJ; GATA transcription factor 19
TrEMBLA0A060D8010.0A0A060D801_MAIZE; GATA transcription factor 25 (Fragment)
STRINGGRMZM2G065896_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.23e-54ZIM-LIKE 2