PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G065829_P03
Common NameZEAMMB73_484571, Zm.21577
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 304aa    MW: 31771.4 Da    PI: 8.1807
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G065829_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.6e-13136180347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +W++eE+ +++ +  +lG+g+W+ Iar    +Rt+ q+ s+ qk+
  GRMZM2G065829_P03 136 PWSEEEHRQFLAGLDKLGKGDWRGIARSYVPTRTPTQVASHAQKF 180
                        8**************************9998************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.532318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.46129185IPR017930Myb domain
SuperFamilySSF466895.54E-17130186IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-16132184IPR006447Myb domain, plants
SMARTSM007175.1E-10133183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-11133176IPR009057Homeodomain-like
PfamPF002491.1E-10136179IPR001005SANT/Myb domain
CDDcd001671.24E-10136181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0004006anatomymesophyll cell
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0025589anatomyleaf lamina tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MARKCSHCGN YGHNSRTCGL GLGLGHREIM LCEGGDDNNG RSGLRLFGVQ VRIGGGGGAG  60
SASMKKSYSM DCLQLAAPHA CSSLVSSPSS SSLCSSSSPS SLLLSIDDGL QRGAADGYLS  120
DGPHGRAVQE RKKGVPWSEE EHRQFLAGLD KLGKGDWRGI ARSYVPTRTP TQVASHAQKF  180
FLRQSSMGKK KRRSSLFDMV PICENSASIS DPLDVARHGV ASADSERAAV DVDLMNSTTE  240
GDDGRSRDVV SSASGAGTAL RFPAAAAQTE PLHPSSSHGH GRGHHCSPLD LELGMSLPAP  300
SVGT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188192KKKRR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G065829
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G065829_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0368510.0BT036851.1 Zea mays full-length cDNA clone ZM_BFb0143J15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001297447.10.0uncharacterized protein LOC100194332
TrEMBLA0A1D6FYP60.0A0A1D6FYP6_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRINGGRMZM2G065829_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49323066
Representative plantOGRP3941699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.14e-42MYB_related family protein