PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G065829_P02 | ||||||||
Common Name | ZEAMMB73_484571, Zm.21577 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 217aa MW: 23294.5 Da PI: 9.7634 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.2 | 9.2e-14 | 136 | 180 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+ +++ + +lG+g+W+ Iar +Rt+ q+ s+ qk+ GRMZM2G065829_P02 136 PWSEEEHRQFLAGLDKLGKGDWRGIARSYVPTRTPTQVASHAQKF 180 8**************************9998************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.532 | 3 | 18 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 18.46 | 129 | 185 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.04E-17 | 130 | 186 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.7E-17 | 132 | 184 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.1E-10 | 133 | 183 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-11 | 133 | 176 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.4E-11 | 136 | 179 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.33E-11 | 136 | 181 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MARKCSHCGN YGHNSRTCGL GLGLGHREIM LCEGGDDNNG RSGLRLFGVQ VRIGGGGGAG 60 SASMKKSYSM DCLQLAAPHA CSSLVSSPSS SSLCSSSSPS SLLLSIDDGL QRGAADGYLS 120 DGPHGRAVQE RKKGVPWSEE EHRQFLAGLD KLGKGDWRGI ARSYVPTRTP TQVASHAQKF 180 FLRQSSMGKK KRRSSLFDMV CACRHQHLSL FFLYVIA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 188 | 192 | KKKRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.21577 | 0.0 | endosperm| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G065829 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G065829_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036851 | 0.0 | BT036851.1 Zea mays full-length cDNA clone ZM_BFb0143J15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020397505.1 | 1e-142 | putative MYB DNA-binding domain superfamily protein isoform X3 | ||||
TrEMBL | A0A3L6DRI3 | 1e-143 | A0A3L6DRI3_MAIZE; Transcription factor MYBS3 | ||||
STRING | GRMZM2G065829_P03 | 1e-143 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 4e-42 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G065829_P02 |