PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G065496_P04 | ||||||||
Common Name | LOC100193780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | B3 | ||||||||
Protein Properties | Length: 365aa MW: 41726.2 Da PI: 8.8765 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52 | 1.3e-16 | 48 | 126 | 14 | 97 |
T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 14 grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +r+++p kfa++++g+ + + l+++s+ ++W v + +k++++ +l +GW++F+ka++L+e+D ++F +g+s+f v vf GRMZM2G065496_P04 48 HRISVPEKFAKNFKGQI--TEEFHLKSPSSaETWHVGV--EKHGDKLFLVSGWENFAKAHELEENDLLLFACSGNSSF--EVLVF 126 789*******9998884..4579999*7776*******..********************************999999..55555 PP | |||||||
2 | B3 | 43.2 | 7.1e-14 | 259 | 356 | 2 | 99 |
EEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 2 fkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 ++ l +++v ++ ++l++p kfa++h g+ + ++l+ + ++W v + y + r++ +F ++n+L egD++vF+l++ ++ GRMZM2G065496_P04 259 VTLLRKNHVQRRnNCLIIPSKFAADHLGERAH--NIILRRpNRKEKWHVSY-YHSRHTRCFQNLALFKFTRENKLHEGDICVFELMKGeRRV 347 555666666665488***********666444..69999945559******.655556777888899*****************99666999 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 +++v+v+rk GRMZM2G065496_P04 348 TMTVHVVRK 356 9***99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.73E-20 | 31 | 131 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.253 | 35 | 129 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-19 | 37 | 131 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.20E-15 | 37 | 126 | No hit | No description |
SMART | SM01019 | 2.9E-11 | 38 | 129 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-13 | 48 | 125 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-18 | 251 | 356 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.81E-16 | 252 | 356 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.25E-12 | 256 | 355 | No hit | No description |
SMART | SM01019 | 9.1E-7 | 258 | 357 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-12 | 258 | 356 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.052 | 259 | 357 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MQQEHAQPSM VGAKGCERCR DWQEHYYWEH MDASKIRFFR CMTGDFAHRI SVPEKFAKNF 60 KGQITEEFHL KSPSSAETWH VGVEKHGDKL FLVSGWENFA KAHELEENDL LLFACSGNSS 120 FEVLVFGASG CEKVSSLFGS GLGPDMGKQF NDVVRRHGVH HSVTVSDSED TVAPSQLVRS 180 PRNALPLKEP SGKARPSKYE SPNSSNFIVR HVATGKEGTD DEYANSNYYY SLSANRLGDE 240 EKEEIIGLAP IRPNNPVFVT LLRKNHVQRR NNCLIIPSKF AADHLGERAH NIILRRPNRK 300 EKWHVSYYHS RHTRCFQNLA LFKFTRENKL HEGDICVFEL MKGERRVTMT VHVVRKANGR 360 FILVV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.34400 | 0.0 | meristem| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G065496 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G065496_P04 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036138 | 0.0 | BT036138.1 Zea mays full-length cDNA clone ZM_BFb0097O01 mRNA, complete cds. | |||
GenBank | EU959694 | 0.0 | EU959694.1 Zea mays clone 219410 B3 DNA binding domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001132338.1 | 0.0 | uncharacterized protein LOC100193780 | ||||
Swissprot | Q2QMT2 | 1e-121 | Y1223_ORYSJ; B3 domain-containing protein Os12g0592300 | ||||
TrEMBL | B4FGA0 | 0.0 | B4FGA0_MAIZE; B3 domain-containing protein | ||||
STRING | GRMZM2G065496_P04 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 | Representative plant | OGRP6299 | 8 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-29 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G065496_P04 |
Entrez Gene | 100193780 |
Publications ? help Back to Top | |||
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