PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G065451_P01 | ||||||||
Common Name | LOC100382631, SBP20, ZEAMMB73_450590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | SBP | ||||||||
Protein Properties | Length: 482aa MW: 50723.7 Da PI: 8.9757 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.6 | 5.7e-41 | 162 | 238 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC++dls+ak+yhr+h+vCe hskap+v+v+gle+rfCqqCsrfh l efD++k+sCrrrL++hn+rrrk+q+ GRMZM2G065451_P01 162 CQVEGCRTDLSSAKDYHRKHRVCEPHSKAPKVVVAGLERRFCQQCSRFHGLAEFDQKKKSCRRRLNDHNARRRKPQP 238 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.7E-33 | 155 | 223 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.06 | 159 | 236 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.06E-38 | 161 | 241 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.4E-31 | 162 | 235 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MGSFGMDMDW NQKASVLLWD WENLPPAAAN GSESHRTTAA APQFAGLEAT GHEPAPSSVS 60 SSIHSLPSAK GNKNKNNMEL ISFAPAKAPD KDTGSVLSSG EPVVLGLKLG KRTYFEDGCG 120 LGQSGKSSAA LGTASAATPP GPAKKAKAAA AAPTAQQQKS YCQVEGCRTD LSSAKDYHRK 180 HRVCEPHSKA PKVVVAGLER RFCQQCSRFH GLAEFDQKKK SCRRRLNDHN ARRRKPQPEA 240 LPFGSSRLSA MFYDTRRQAS LLFGEGPYGQ MRSCASSWWD SPGAGGGGFK FAETRGAPWL 300 KPARAAADGL LPLSGQQQQQ VWNDSIPHVA HQEDFDGFTV TAFKGISPKT LDHQGAGVEA 360 CAAVSSPDGA PDLQRALSLL SNSPAGGGGT NTNHPPPPPA AELHHHRAAP SSCLAAGSVS 420 VLQEASSPGL WQDGGGSAAL GHHAHARLQA LDAAMATAQE LLQLPRPPPS YGGSSSHYDL 480 MR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-27 | 162 | 235 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 217 | 234 | KKKSCRRRLNDHNARRRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.35572 | 0.0 | ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G065451 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G065451_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT064536 | 0.0 | BT064536.1 Zea mays full-length cDNA clone ZM_BFc0178N24 mRNA, complete cds. | |||
GenBank | BT064560 | 0.0 | BT064560.1 Zea mays full-length cDNA clone ZM_BFc0183C18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001168698.1 | 0.0 | SBP-transcription factor 20 | ||||
Swissprot | A2X0Q6 | 1e-107 | SPL3_ORYSI; Squamosa promoter-binding-like protein 3 | ||||
Swissprot | A3A2Z8 | 1e-107 | SPL3_ORYSJ; Squamosa promoter-binding-like protein 3 | ||||
TrEMBL | C0P8B7 | 0.0 | C0P8B7_MAIZE; SBP transcription factor | ||||
STRING | GRMZM2G065451_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3697 | 37 | 76 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 7e-36 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G065451_P01 |
Entrez Gene | 100382490 |