PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G065374_P01
Common NameZm.6794
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 523aa    MW: 56431.2 Da    PI: 6.8215
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G065374_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.44.6e-17328374455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn  ErrRRdriN+++  L+el+P++      K +Ka+iL +++eY+ksLq
  GRMZM2G065374_P01 328 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASILDETIEYLKSLQ 374
                        6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.15E-17320378No hitNo description
SuperFamilySSF474598.9E-21322388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.482324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-21328383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-14328374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-17330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0009089anatomyendosperm
PO:0020127anatomyprimary root
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025287anatomyseedling coleoptile
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007015developmental stageradicle emergence stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007045developmental stagecoleoptile emergence stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MSRVNGVTDA LSIGPSAGYI LFLVIVHILL FFTAYDRSYT LLAIQKVTLL CSACKAPRTD  60
GGDDSQGSSA RARQQQHAAV LRSESGEKTL FSGHSSRSPD EMDGNARSAA TNQKKPVVAD  120
DDLVELLWHN GSVVAQPQAH QRPAPTYDPD RPGTSGLTGE ETAAWFPDTL DDALEKDLYT  180
QLWYSTIADA APQHEGTLPG PTSQPSPSPP VGSSGVESSW AGDICSTFCG SNQVLRTPAR  240
IRGKDAALQS ELPSNTGAHD GTSSSGGSGS NYGGFGLPSD SVHVQKRKGR CRDDSDSPSE  300
DAECEEASEE TKPSRRYGTK RRTRAAEVHN LSERRRRDRI NEKMRALQEL IPHCNKTDKA  360
SILDETIEYL KSLQMQVQIM WMTSGMAPMM FPGVHQFIPQ MALGMNPGCI PAAQGLSQMP  420
RLPYMNHTLP NHIHLNSSPA MNLMNPLNAA NQVQIGHLRD ASSHLLHLDG GRAAVVPQVP  480
GPGPHVHGHQ IAQAEEHNKI LEVAASTVIP TSKAGQPPTL HRV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319336KRRTRAAEVHNLSERRRR
2332337ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.374400.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G065374
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in the node portions of the stem. Expressed in the leaves and the basal part of shoots. {ECO:0000269|PubMed:22984180}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G065374_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0695451e-148BT069545.1 Zea mays full-length cDNA clone ZM_BFb0157L03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008665523.10.0transcription factor PIF5 isoform X1
RefseqXP_008665524.10.0transcription factor PIF5 isoform X1
RefseqXP_008665525.10.0transcription factor PIF5 isoform X1
RefseqXP_008665526.10.0transcription factor PIF5 isoform X1
RefseqXP_008665527.10.0transcription factor PIF5 isoform X1
RefseqXP_020402574.10.0transcription factor PIF5 isoform X1
SwissprotQ10CH51e-153PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13
TrEMBLA0A1D6L6L00.0A0A1D6L6L0_MAIZE; Transcription factor PIF4
STRINGGRMZM2G065374_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31743482
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.14e-36phytochrome interacting factor 3-like 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  3. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]
  4. Todaka D, et al.
    Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress.
    Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52
    [PMID:22984180]