PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G065290_P01
Common NameLOC103651063
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 263aa    MW: 29686.4 Da    PI: 5.1303
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G065290_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.92.6e-2072131358
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnh 58 
                        Dg+ WrKYGqK++k++e+pr Y+rC+++   +C + k ++++ ++dp + e+tY+ eH++
  GRMZM2G065290_P01  72 DGHLWRKYGQKKIKDAEYPRLYFRCSYRedrHCLASKLLQQKnDDDPPLYEVTYTYEHTC 131
                        9**************************99999******9876156899**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-2163134IPR003657WRKY domain
SuperFamilySSF1182901.83E-2064134IPR003657WRKY domain
SMARTSM007743.5E-3070133IPR003657WRKY domain
PfamPF031065.2E-2272131IPR003657WRKY domain
PROSITE profilePS5081116.32972134IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MKREQSLSFE FGDPSAQDAM GSASESSYSY SPPGGAVFGL SPPESSPRSG RNNNRRRDRP  60
SWVRLTDTPY FDGHLWRKYG QKKIKDAEYP RLYFRCSYRE DRHCLASKLL QQKNDDDPPL  120
YEVTYTYEHT CGAPPVSFPD IVAEPPVSTD GLVLRFDSPS SDAWMQQNGR YHSTSRSAFM  180
MLSFGSSSQT HDQQPAVFRS DLEAGLSSFP TEGLPPAPPP ANDDDGDMLS KLNSFAYDFD  240
NQMHFGDHTY LPHNSSNYDH DDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-15721311068OsWRKY45
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G065290
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G065290_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008674882.10.0probable WRKY transcription factor 62
TrEMBLA0A1D6N8860.0A0A1D6N886_MAIZE; Putative WRKY transcription factor 30
STRINGGRMZM2G065290_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115292433
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.19e-18WRKY DNA-binding protein 46