PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G064466_P01
Common NameLOC100281545
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TALE
Protein Properties Length: 612aa    MW: 64715.2 Da    PI: 6.8374
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G064466_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.8e-093573941954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  GRMZM2G064466_P01 357 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 394
                        664459******************************88 PP
2BELL92.34.8e-30209278271
               BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                         +elq+ kakL  +l+eV++rY++y+eq+++v++sFeavag  +a+ Yt+lA+++iSrhFr+++d +a q
  GRMZM2G064466_P01 209 AAELQRLKAKLYAMLQEVERRYRRYREQMRAVAGSFEAVAGERAAAAYTRLAQRTISRHFRSVRDGVAAQ 278
                        5799***************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-44146277IPR006563POX domain
PfamPF075261.0E-39152275IPR006563POX domain
PROSITE profilePS5007112.082335398IPR001356Homeobox domain
CDDcd000861.54E-12338399No hitNo description
SMARTSM003893.3E-7338402IPR001356Homeobox domain
SuperFamilySSF466894.28E-17339406IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-27341404IPR009057Homeodomain-like
PfamPF059201.6E-17355394IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MAHDEPGFAY ADYFAAAAGA VATFVPEVDV GGGGEEGLHL YGLQPHHQQP GVEMYGARGH  60
MPPAAMMAAH GGKAALGLDV ASPVVGGHFG DDHLRQALQA PLSLSLHDDG TADAAPLALH  120
HHHHHLGGVP QAQQHQPPGA WPQPQQQGAW HLRGSRFLRP TQQLLQEFCT LPVDTVTSTP  180
AKPASVEDGV GSSSSAAAPS QQIIQAMDAA ELQRLKAKLY AMLQEVERRY RRYREQMRAV  240
AGSFEAVAGE RAAAAYTRLA QRTISRHFRS VRDGVAAQMQ AVRRALGEKD ADDGGVVPAA  300
AGMMANKGET TPRLRVIDQC LRQHRAYQTG VVLESQPWRP QRGLPERAVS ILRAWMFEHF  360
LHPYPSDVDK HILARQTGLS RSQVSNWFIN ARVRLWKPMV EEMYSEEMKD PKEGACSNAN  420
SSVNTGAGYA SEELGQPLGH GGACGGVDEQ KPTRAQLVHD AGSLASAVSI GSSRDQQQIS  480
SINFRMMDHL DFDAYSGDPA AAGGPAAGFG GAGASGGVSL TLGLQQHADG DPHGGVNIAF  540
AAAPSAAHEF LFMAGGGEHR MVAAGAVHPS SSHGHGQFAA SMQGDSAGVA SSHYHRGLGA  600
ATGFQLLHDL AG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A1e-16344402563Homeobox protein Meis2
4xrm_B1e-16344402563Homeobox protein Meis2
4xrs_A8e-17344401158Homeobox protein Meis1
4xrs_B8e-17344401158Homeobox protein Meis1
5bng_A8e-17344402159Homeobox protein Meis2
5bng_B8e-17344402159Homeobox protein Meis2
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G064466
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G064466_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570600.0EU957060.1 Zea mays clone 1581614 bell-like homeodomain protein 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354191.10.0uncharacterized protein LOC100281545
RefseqXP_008674921.10.0bell-like homeodomain protein 3 isoform X1
TrEMBLA0A1D6K7I10.0A0A1D6K7I1_MAIZE; Bell-like homeodomain protein 3
STRINGGRMZM2G064466_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.12e-65TALE family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]