PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G063522_P01
Common Nameumc2678
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 305aa    MW: 34128.8 Da    PI: 8.1747
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G063522_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1645.3e-51141461128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                        lppGfrFhP+d+elv +yL+kk+ g      +   +     ++ +vd++k+ePwdLp  +  + kewyf+s rd+kyatg+r+nrat+sgyW
  GRMZM2G063522_P01  14 LPPGFRFHPRDDELVLDYLAKKLGGGGgpvvV---SiygcpTMVDVDLNKCEPWDLPDIACIGGKEWYFYSLRDRKYATGQRTNRATDSGYW 102
                        79**********************99976652...134444699*************6555689**************************** PP

                NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        katgkd+++ + kg lvg++ktLvfy+grapkg+kt+Wvmhe+r+
  GRMZM2G063522_P01 103 KATGKDRPISR-KGLLVGMRKTLVFYQGRAPKGKKTEWVMHEFRM 146
                        *********99.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-615169IPR003441NAC domain
PROSITE profilePS5100555.60614169IPR003441NAC domain
PfamPF023653.2E-2515146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MMAIKSLSMV EASLPPGFRF HPRDDELVLD YLAKKLGGGG GPVVVSIYGC PTMVDVDLNK  60
CEPWDLPDIA CIGGKEWYFY SLRDRKYATG QRTNRATDSG YWKATGKDRP ISRKGLLVGM  120
RKTLVFYQGR APKGKKTEWV MHEFRMEGRD DPMKLPFKED WVLCRVFYKS RATVAKPPTE  180
SSSFNIDAAT TSLPPLIDNN FNISFDQPGS SSVQNLEGYE QVPCFSSNPS QQPSSSMNAA  240
RLPPSAAMAD PEQQMGKSII KDVLMSQFSR FEGSVKREAP PSNFSQDGFE YLAESGFTQM  300
WNSFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-511017011169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.346150.0endosperm| pedicel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G063522
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G063522_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0655120.0BT065512.1 Zea mays full-length cDNA clone ZM_BFb0202I06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020409087.10.0uncharacterized protein LOC100382839 isoform X1
SwissprotQ84TE66e-88NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A1D6GSY30.0A0A1D6GSY3_MAIZE; NAC domain-containing protein 21/22
TrEMBLA0A3L6EQE90.0A0A3L6EQE9_MAIZE; NAC domain-containing protein 21/22
STRINGGRMZM2G063522_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.23e-89NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]