PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G063216_P03 | ||||||||
Common Name | umc2384, ZEAMMB73_243917 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WRKY | ||||||||
Protein Properties | Length: 89aa MW: 10043.3 Da PI: 9.899 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 28.2 | 3.8e-09 | 44 | 65 | 2 | 23 |
--SS-EEEEEEE--TT-SS-EE CS WRKY 2 dDgynWrKYGqKevkgsefprs 23 dDg++WrKYG K+ +s+fpr GRMZM2G063216_P03 44 DDGHQWRKYGEKKLSNSHFPRC 65 8*******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.1E-9 | 31 | 69 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.18E-9 | 36 | 70 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 10.98 | 38 | 89 | IPR003657 | WRKY domain |
SMART | SM00774 | 0.0025 | 43 | 84 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.8E-7 | 44 | 66 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MALDSVPPYP SDLGSSRAAA AARTQQRIRK EERTWTSDTY APYDDGHQWR KYGEKKLSNS 60 HFPRCIKLCD RLLLTLSGGV VRGQVSLHP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.13603 | 1e-104 | cell culture| root| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G063216 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G063216_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034784 | 1e-102 | BT034784.1 Zea mays full-length cDNA clone ZM_BFb0017P16 mRNA, complete cds. | |||
GenBank | EU953900 | 1e-102 | EU953900.1 Zea mays clone 1448775 WRKY46 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001131395.1 | 6e-34 | uncharacterized protein LOC100192722 | ||||
TrEMBL | B6SUJ1 | 3e-35 | B6SUJ1_MAIZE; WRKY46-superfamily of TFs having WRKY and zinc finger domains | ||||
STRING | GRMZM2G063216_P01 | 2e-33 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 5e-07 | WRKY DNA-binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G063216_P03 |