PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G063203_P01 | ||||||||
Common Name | LOC100273264, ZEAMMB73_888358, Zm.84424 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | Trihelix | ||||||||
Protein Properties | Length: 668aa MW: 71709.6 Da PI: 5.9776 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 94.2 | 1.3e-29 | 95 | 179 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e+laLi++r+em+ ++r++ lk+plWe v++k++ g++rs+k+Ckek+en+ k+y+++k+ + +r++++s +++f+qlea GRMZM2G063203_P01 95 RWPREETLALIRIRTEMDADFRSSPLKAPLWENVARKLAGLGYHRSAKKCKEKFENVDKYYRRTKDARAGRQDGKS--YRFFSQLEA 179 8*********************************************************************866665..*******85 PP | |||||||
2 | trihelix | 106.8 | 1.5e-33 | 408 | 493 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+ev aLi++r+e++e++ ++ +k+plWe+++++mr g++rs+k+Ckekwen+nk+ykk+ke++k+r +e+s+tcpyf+ql+a GRMZM2G063203_P01 408 RWPKEEVEALIQMRNEKGEKYHDAGAKGPLWEDIAAAMRGIGYSRSAKRCKEKWENINKYYKKVKESNKRR-PEDSKTCPYFHQLDA 493 8********************************************************************97.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.039 | 88 | 152 | IPR017877 | Myb-like domain |
SMART | SM00717 | 3.2E-4 | 92 | 154 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.01E-26 | 94 | 159 | No hit | No description |
Pfam | PF13837 | 3.4E-20 | 94 | 180 | No hit | No description |
SMART | SM00717 | 8.0E-8 | 405 | 467 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 6.41E-24 | 407 | 472 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-6 | 407 | 464 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.16E-6 | 407 | 480 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.409 | 407 | 465 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 2.1E-22 | 408 | 494 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 668 aa Download sequence Send to blast |
MLHHHGGAGS PYMAPETAGT GTGTAPFSPT PTGLAVSVTA AIPALPTMQL QPAGSSANFE 60 ELAAGGSGAG VAVRLQDEDM QADLGASGAG ASGNRWPREE TLALIRIRTE MDADFRSSPL 120 KAPLWENVAR KLAGLGYHRS AKKCKEKFEN VDKYYRRTKD ARAGRQDGKS YRFFSQLEAL 180 HASAPPLPPP PSGMTTVQAG PHQPMEMAWT AGPTVLGPAA VAGLPDLSFS SMSESDSEYD 240 SDDDDDDSGA GEEGLSGGEC DREMMATFER MMKQFTEKQD AMQRVFLETL ERCEAERTAR 300 EEAWRRQEVA RMNREREQLA RERAAAASRD AALIAFLQRV GGGQGEPARL PPHGAGVVPP 360 PPMPDCAPPS PRRHAAAASL QQLVPVPPKA VEALARAGGE GGGSTPSRWP KEEVEALIQM 420 RNEKGEKYHD AGAKGPLWED IAAAMRGIGY SRSAKRCKEK WENINKYYKK VKESNKRRPE 480 DSKTCPYFHQ LDAMYRNKHR SGTGGRTAPR TNMASAVAVA ATVQDNPSKR ELEGKSSNDA 540 DNRKNDEQGN VLTSPASGDT APGGAAKNKT AEGNVDDTDV QHQHQQRFSA DETDSDDDMD 600 MARNYTVYTE EGNNEDKMKY KMGVQERDVI GSSGNVLAPP PSPAAVAATA AAPTSSAAPT 660 SSTFLAVQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.32007 | 0.0 | ovary| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G063203 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G063203_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728032 | 0.0 | KJ728032.1 Zea mays clone pUT6172 trihelix transcription factor (THX16) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001310892.1 | 0.0 | trihelix transcription factor GTL1 | ||||
Refseq | XP_008678887.1 | 0.0 | trihelix transcription factor GTL1 isoform X1 | ||||
TrEMBL | A0A3L6EZL5 | 0.0 | A0A3L6EZL5_MAIZE; Trihelix transcription factor GT-2 | ||||
TrEMBL | K7TYX1 | 0.0 | K7TYX1_MAIZE; Putative homeodomain-like transcription factor superfamily protein isoform 1 | ||||
STRING | GRMZM2G063203_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 | Representative plant | OGRP663 | 15 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 2e-41 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G063203_P01 |
Entrez Gene | 100273264 |