PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G062650_P02 | ||||||||
Common Name | NAC128, Zm.81135 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 391aa MW: 42132.2 Da PI: 6.0572 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.9 | 1.7e-52 | 24 | 155 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhP+d e++++yL+kkv++++ ++ +i+++d++k+ePwdLpk +k +ekewyfF ++d+ky+tg r+nrat++gyWkatgkdkev GRMZM2G062650_P02 24 LPPGFRFHPSDFEIINDYLTKKVHDRDYSC-IAIADADLNKTEPWDLPKVAKMGEKEWYFFYQKDRKYPTGLRANRATEAGYWKATGKDKEV 114 79*************************999.88***************988999************************************** PP NAM 93 lsk....kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ + lvg+kktLvfykgrap+g kt+Wvmheyrle GRMZM2G062650_P02 115 YNPfaaeGLLLVGMKKTLVFYKGRAPRGDKTNWVMHEYRLE 155 **976645555****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.67E-58 | 20 | 198 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.732 | 24 | 198 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-26 | 25 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MADQQQPQQQ PQEMDVDRTG GLELPPGFRF HPSDFEIIND YLTKKVHDRD YSCIAIADAD 60 LNKTEPWDLP KVAKMGEKEW YFFYQKDRKY PTGLRANRAT EAGYWKATGK DKEVYNPFAA 120 EGLLLVGMKK TLVFYKGRAP RGDKTNWVMH EYRLEGSGRL PASPASASGS ATNIAAAMMK 180 ASASACKDEW VVCRVFNKTT GIKKTAAPAY QVAMAGPEMD QNQNNIPAIP IPMPLQLPLP 240 VPMQMQFPIL PDFAMDPVAP YYPNPNAGAG MMPPMALAGM GGAGGLQING ALFGNPVPAP 300 LPMNFYHHQM GMGAAAGQVD MGAAAGQMDM GAAGAGAGGF DVAAPESRPS SMVSQKDEQA 360 NAAEISSMMS VTGPGSATTT IEMDGIWKYK Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 5e-48 | 15 | 204 | 11 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-48 | 15 | 204 | 11 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-48 | 15 | 204 | 11 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-48 | 15 | 204 | 11 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-48 | 15 | 204 | 11 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-48 | 15 | 204 | 11 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-48 | 15 | 204 | 11 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-48 | 15 | 204 | 11 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.81135 | 0.0 | aleurone| embryo| endosperm| pollen |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G062650 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G062650_P02 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727759 | 0.0 | KJ727759.1 Zea mays clone pUT5703 NAC transcription factor (NAC128) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008673423.1 | 0.0 | NAM-related protein 1 isoform X1 | ||||
Refseq | XP_008673424.1 | 0.0 | NAM-related protein 1 isoform X1 | ||||
TrEMBL | A0A060D1R6 | 0.0 | A0A060D1R6_MAIZE; NAC transcription factor (Fragment) | ||||
STRING | GRMZM2G062650_P02 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 3e-71 | NAC domain containing protein 100 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G062650_P02 |
Entrez Gene | 542131 |
Publications ? help Back to Top | |||
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