PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G062541_P01
Common NameZEAMMB73_761291, Zm.151876
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 505aa    MW: 52434.3 Da    PI: 6.6062
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G062541_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.51.8e-16326372455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn  ErrRRdriN+++  L+el+P++      K++K+++Le+A+eY+k Lq
  GRMZM2G062541_P01 326 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKSSMLEEAIEYLKTLQ 372
                        5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.42E-18319376No hitNo description
Gene3DG3DSA:4.10.280.101.7E-20322380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.803322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-20322382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-14326372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-17328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MPVSISICRT GPGEELAELL WDRGPALRRA PPPFQPFTCS AAGSSRSQEL KRHASDTTKA  60
SAFVTAVSVP LGTHDAGSGL GLAGLPVHDD DDAVPWLHCP VADDGDGDTA PLPPEFCAGL  120
LSEYSEVAAP APAFHAAATP PAEAAANKLA PPSAAGGGEG VLNFTFFSRP LQRPQAAAAP  180
AAAAASNPVE STVVQAAANR LRSTPLFSEQ RMAWLQPPKA PRTTAAAAAP PPPPLAPLLP  240
DSRHGETVGT VAQPQPRSQP EARPPDAAAV TTSSVCSGNG GRSQLKRSRH LAADCSVSPD  300
EDLDDEPGAT RRSAARSAKR CRTAEVHNLS ERRRRDRINE KMRALQELIP NCNKVDKSSM  360
LEEAIEYLKT LQLQVQMMSM GTGLCMPPAA MLLPAMQQQL LHHHPMAHFP HLGMGLGFGM  420
GAAAGFDMLP FPCVAAGAHF PCPPGAMFGV PGQAMPSLPA AFAHMYGAGS GAGPAGQTEA  480
ADAAAPARPG EAEQGDQQVQ HAKQT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1330335ERRRRD
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G062541
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G062541_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662938.10.0transcription factor APG isoform X2
SwissprotQ0JNI91e-82PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLA0A3L6G8W60.0A0A3L6G8W6_MAIZE; Transcription factor APG
TrEMBLK7TIH00.0K7TIH0_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGGRMZM2G062541_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-29phytochrome interacting factor 3
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]