PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G062391_P01 | ||||||||
Common Name | Zm.26244 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 346aa MW: 37378.7 Da PI: 6.931 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29.5 | 1.6e-09 | 150 | 197 | 5 | 52 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr++r NR +A rs +RK ++ Le+kv++L++e ++L +l GRMZM2G062391_P01 150 KRAKRILANRQSAARSKERKARYMTDLERKVQTLQTEATTLSAQLTLF 197 9****************************************9888765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.6E-14 | 146 | 210 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.427 | 148 | 211 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.1E-8 | 150 | 197 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 9.64E-11 | 150 | 201 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 6.2E-10 | 150 | 204 | No hit | No description |
CDD | cd14703 | 3.79E-21 | 151 | 200 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 346 aa Download sequence Send to blast |
MQQPGPADLP GWAFPPRAGP APAAARGAHH RRARSEVAFR LPDDLGLGGG AGPDGDAFDE 60 IGSEDDLFST FMDIEKISTS GPSDRAAENS SPPRPKHRHS SSVDGSGFFF SPGAGGGAGK 120 DAAASLAEVL EAKKSMTPEQ LAELAAIDPK RAKRILANRQ SAARSKERKA RYMTDLERKV 180 QTLQTEATTL SAQLTLFQRD TTGLSTENAE LKIRLQAMEQ QAQLRDALND ALKQELERLK 240 HATGEMTNSS EAYNMRFQHV PYNSSFFPLS QQNASPHLGS TQLPLPFHPP HPNVPNHQMV 300 SHRNTLPDIM QQESLGRLQG LDIGKGPLVV KLESSSISAS ESSSTF |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.26244 | 0.0 | meristem| pollen| tassel |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G062391 |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at high levels in roots, low level in leaf sheath, but not in leaf blade. Predominantly expressed in vascular tissues. {ECO:0000269|PubMed:14704272}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G062391_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT061459 | 0.0 | BT061459.1 Zea mays full-length cDNA clone ZM_BFb0148I18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001152693.1 | 0.0 | uncharacterized protein LOC100286334 | ||||
Swissprot | Q6S4P4 | 1e-160 | RF2B_ORYSJ; Transcription factor RF2b | ||||
TrEMBL | C0HGK3 | 0.0 | C0HGK3_MAIZE; Basic leucine-zipper 52 | ||||
TrEMBL | K4JC79 | 0.0 | K4JC79_MAIZE; BZIP-type transcription factor (Fragment) | ||||
STRING | GRMZM2G062391_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2683 | 36 | 83 | Representative plant | OGRP126 | 17 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40620.1 | 8e-69 | bZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G062391_P01 |
Publications ? help Back to Top | |||
---|---|---|---|
|