PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G062009_P02 | ||||||||
Common Name | LOC100217205, ZEAMMB73_934201 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 182aa MW: 19003.9 Da PI: 5.5236 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 34.1 | 7.9e-11 | 1 | 27 | 102 | 128 |
NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 ++ktLvfy+grap+g+k+ Wvmhe+rl GRMZM2G062009_P02 1 MRKTLVFYRGRAPNGVKSGWVMHEFRL 27 89***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-16 | 1 | 46 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 21.847 | 1 | 46 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MRKTLVFYRG RAPNGVKSGW VMHEFRLDTP HSPPREDWVL CRVFQKTKAA DGDGDGGAQD 60 GDSSSPPAAF TGPSRPRAVS EPPDHSAPPA GGGYYYGLAF GPRQVEVAQQ QCYGGGGATV 120 ADHHHGFTRD SGGAAGFGAT WGGGVAGGEC GAGYLDMDGA FDVMMAGCFG GGDMDEFPQV 180 WR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G062009 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G062009_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038122 | 0.0 | BT038122.1 Zea mays full-length cDNA clone ZM_BFb0212P24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001137035.1 | 1e-130 | uncharacterized protein LOC100217205 | ||||
TrEMBL | B4FLY4 | 1e-128 | B4FLY4_MAIZE; NAC domain containing protein 74 | ||||
TrEMBL | K4JRT9 | 1e-128 | K4JRT9_MAIZE; NAC-type transcription factor (Fragment) | ||||
STRING | GRMZM2G062009_P01 | 1e-129 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 8e-22 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G062009_P02 |
Entrez Gene | 100217205 |