PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G062009_P01
Common NameLOC100217205, ZEAMMB73_934201
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 294aa    MW: 31825.3 Da    PI: 6.6
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G062009_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.63.5e-51101391128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrF P+deelv++yL+kkv+++++    ++ evd++  ePw+Lp+ +k + +ewyfFs rd+kyatg+r+nrat++gyWkatgkd+ev
  GRMZM2G062009_P01  10 LPPGFRFYPSDEELVCHYLHKKVANERIAQ-GTLVEVDLHAREPWELPEVAKLTATEWYFFSFRDRKYATGSRTNRATRTGYWKATGKDREV 100
                        79*************************998.88***************87788899************************************ PP

                NAM  93 lsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         s+   +  +vg++ktLvfy+grap+g+k+ Wvmhe+rl
  GRMZM2G062009_P01 101 RSSssaTAVVVGMRKTLVFYRGRAPNGVKSGWVMHEFRL 139
                        *985555556***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-607158IPR003441NAC domain
PROSITE profilePS5100558.21610158IPR003441NAC domain
PfamPF023654.3E-2811139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MALREIESTL PPGFRFYPSD EELVCHYLHK KVANERIAQG TLVEVDLHAR EPWELPEVAK  60
LTATEWYFFS FRDRKYATGS RTNRATRTGY WKATGKDREV RSSSSATAVV VGMRKTLVFY  120
RGRAPNGVKS GWVMHEFRLD TPHSPPREDW VLCRVFQKTK AADGDGDGGA QDGDSSSPPA  180
AFTGPSRPRA VSEPPDHSAP PAGGGYYYGL AFGPRQVEVA QQQCYGGGGA TVADHHHGFT  240
RDSGGAAGFG ATWGGGVAGG ECGAGYLDMD GAFDVMMAGC FGGGDMDEFP QVWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-48716214169NO APICAL MERISTEM PROTEIN
1ut4_B2e-48716214169NO APICAL MERISTEM PROTEIN
1ut7_A2e-48716214169NO APICAL MERISTEM PROTEIN
1ut7_B2e-48716214169NO APICAL MERISTEM PROTEIN
3swm_A3e-48716217172NAC domain-containing protein 19
3swm_B3e-48716217172NAC domain-containing protein 19
3swm_C3e-48716217172NAC domain-containing protein 19
3swm_D3e-48716217172NAC domain-containing protein 19
3swp_A3e-48716217172NAC domain-containing protein 19
3swp_B3e-48716217172NAC domain-containing protein 19
3swp_C3e-48716217172NAC domain-containing protein 19
3swp_D3e-48716217172NAC domain-containing protein 19
4dul_A2e-48716214169NAC domain-containing protein 19
4dul_B2e-48716214169NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G062009
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G062009_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0381220.0BT038122.1 Zea mays full-length cDNA clone ZM_BFb0212P24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001137035.10.0uncharacterized protein LOC100217205
SwissprotQ9FLJ27e-60NC100_ARATH; NAC domain-containing protein 100
TrEMBLB4FLY40.0B4FLY4_MAIZE; NAC domain containing protein 74
TrEMBLK4JRT90.0K4JRT9_MAIZE; NAC-type transcription factor (Fragment)
STRINGGRMZM2G062009_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.13e-71NAC domain containing protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]