PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G061734_P01
Common NameLOC100279240
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SBP
Protein Properties Length: 429aa    MW: 44959.3 Da    PI: 7.1839
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G061734_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.75.1e-41109185278
                        -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        C v+gC+adls++++yhrrhkvCe+hsk+pvv+v+g+e rfCqqCsrfh l efDe+krsCr+rL++hn+rrrk+q+
  GRMZM2G061734_P01 109 CAVDGCKADLSKCRDYHRRHKVCEAHSKTPVVVVAGREMRFCQQCSRFHLLLEFDEAKRSCRKRLDGHNRRRRKPQP 185
                        **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-35101170IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.163106183IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.03E-38107188IPR004333Transcription factor, SBP-box
PfamPF031101.1E-30109182IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MDWDLKMPVS WDLPDLEHDA MPPPPPVSAA STAAASGIAA AAAAPSSATA PSRAECSVDL  60
KLGGLGEFGA ADGTATKEPA AATAAPSASP MKRPRLGPGG AGGAQCPSCA VDGCKADLSK  120
CRDYHRRHKV CEAHSKTPVV VVAGREMRFC QQCSRFHLLL EFDEAKRSCR KRLDGHNRRR  180
RKPQPDTMNS GSFMTSQQGL FSSAGTRFSS FPAPRPEPSW SGVIKSEDSS YYTHHPVLSN  240
RPHVAGTSTS PAYSKEGRRF PFLQDGDQVS FSASGAGTLE VSTVCQPLLK TTAAVAPPPP  300
ESSKMLAPVL DSDCALSLLS SPANSSSVDV SRMVQPAERI PMAQPLVPGL QHHQFGGSPV  360
PDWFAGSGAV PAAGTGGFAC PHSVESEQFN TVLVPSSDGG HEMNYHGIFH VGGEGSSDGT  420
SPSLPFSWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-2799182184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165182KRSCRKRLDGHNRRRRKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.187510.0meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G061734
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G061734_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0538750.0BT053875.1 Zea mays full-length cDNA clone ZM_BFb0379K14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001145733.20.0SBP-transcription factor 5
SwissprotQ0J0K11e-154SPL18_ORYSJ; Squamosa promoter-binding-like protein 18
TrEMBLB7ZX330.0B7ZX33_MAIZE; Uncharacterized protein
STRINGGRMZM2G061734_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.19e-44SBP family protein