PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G061487_P02
Common NameZm.10842
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 262aa    MW: 28167.6 Da    PI: 5.7642
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G061487_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-2081130255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++a+ +l+g
  GRMZM2G061487_P02  81 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEQAALAYDQAAYRLRG 130
                        59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.13E-3180140No hitNo description
SuperFamilySSF541719.81E-2381140IPR016177DNA-binding domain
SMARTSM003802.1E-3581144IPR001471AP2/ERF domain
PROSITE profilePS5103223.30181138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3281140IPR001471AP2/ERF domain
PfamPF008471.6E-1482130IPR001471AP2/ERF domain
PRINTSPR003673.7E-118293IPR001471AP2/ERF domain
PRINTSPR003673.7E-11104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MRAMESFMQD DAPSPLAMPP APSFPAAAAQ YPATHLSPAQ MQFIQAQLHL QRNPGLGPRA  60
QPMKPAVPVP PAPAPQRPVK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEQAALA  120
YDQAAYRLRG DAARLNFPDN AESRAPLDPA VDAKLQAICA TIAAASSSSK NSKAKSKATP  180
INASVLEAAA ASPSNSSSDE GSGSGFGSDD EMSSSSPTPV VAPPVADMGQ LDFSEVPWDE  240
DESFVLRKYP SYEIDWDALL SN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2080138463ATERF1
3gcc_A5e-2080138463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.108420.0endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G061487
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G061487_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278180.0KJ727818.1 Zea mays clone pUT5770 AP2-EREBP transcription factor (EREB204) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001334796.10.0uncharacterized protein LOC542569
SwissprotQ8H1E42e-53RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A1D6KPR10.0A0A1D6KPR1_MAIZE; DRE-binding protein 1
STRINGGRMZM2G061487_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.13e-32ERF family protein
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]