PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G061487_P01
Common NameEREB204, Zm.10842
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 276aa    MW: 29548.2 Da    PI: 5.1153
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G061487_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.4e-2095144255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++a+ +l+g
  GRMZM2G061487_P01  95 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEQAALAYDQAAYRLRG 144
                        59******9.**********955...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.05E-3194154No hitNo description
PROSITE profilePS5103223.30195152IPR001471AP2/ERF domain
SMARTSM003802.1E-3595158IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2295154IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-3295154IPR001471AP2/ERF domain
PRINTSPR003674.0E-1196107IPR001471AP2/ERF domain
PfamPF008471.7E-1496144IPR001471AP2/ERF domain
PRINTSPR003674.0E-11118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MAAAINLPGP SEDLMRAMES FMQDDAPSPL AMPPAPSFPA AAAQYPATHL SPAQMQFIQA  60
QLHLQRNPGL GPRAQPMKPA VPVPPAPAPQ RPVKLYRGVR QRHWGKWVAE IRLPRNRTRL  120
WLGTFDTAEQ AALAYDQAAY RLRGDAARLN FPDNAESRAP LDPAVDAKLQ AICATIAAAS  180
SSSKNSKAKS KATPINASVL EAAAASPSNS SSDEGSGSGF GSDDEMSSSS PTPVVAPPVA  240
DMGQLDFSEV PWDEDESFVL RKYPSYEIDW DALLSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2094152463ATERF1
3gcc_A5e-2094152463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.108420.0endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G061487
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G061487_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278180.0KJ727818.1 Zea mays clone pUT5770 AP2-EREBP transcription factor (EREB204) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001334796.10.0uncharacterized protein LOC542569
TrEMBLA0A060D7H30.0A0A060D7H3_MAIZE; AP2-EREBP transcription factor (Fragment)
STRINGGRMZM2G061487_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.13e-33ERF family protein