PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G060876_P01 | ||||||||
Common Name | EREB73, F9009 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 277aa MW: 30129.6 Da PI: 10.8213 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41 | 4.7e-13 | 166 | 215 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 ++y GVr+ + +gr++AeIr+p + + r++lg+f+taee a a+++a ++l+ GRMZM2G060876_P01 166 TRYLGVRRWP-WGRYAAEIREPAT---KERHWLGTFDTAEEGAVAYDRAVRSLR 215 5799**9999.**********843...4**********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.22E-18 | 166 | 215 | No hit | No description |
SMART | SM00380 | 4.5E-18 | 167 | 231 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-5 | 167 | 215 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.5E-20 | 167 | 216 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.214 | 167 | 225 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.99E-15 | 167 | 216 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-6 | 168 | 179 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-6 | 190 | 206 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MGPDLGPNPA RYIGPCRPGT KIFRAVPCLG RAFFTVLRAG PSGPAQMYTY SFGSEHLALA 60 CSAASWVVPC WPGTSLSCFG SQLVGPSQHE IESGRALPGL ANRSKAQHGP KARRASVGSC 120 WPKHGTPQFL ISAHLGLSVA VALDPSVLRL WARSLVAQPQ ADANTTRYLG VRRWPWGRYA 180 AEIREPATKE RHWLGTFDTA EEGAVAYDRA VRSLRRGLRP RRALPSTQPR CFVPHREWAR 240 PLVAAWGWTT GVLGPYSPLL GGGMVGTGVR EDRMDQL |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G060876 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G060876_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY664415 | 0.0 | AY664415.1 Zea mays cultivar B73 locus 9009, complete sequence. | |||
GenBank | AY664419 | 0.0 | AY664419.1 Zea mays cultivar Mo17 locus 9009, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023156478.1 | 1e-104 | uncharacterized protein LOC111589793 | ||||
TrEMBL | Q5GAQ0 | 0.0 | Q5GAQ0_MAIZE; AP2-EREBP transcription factor | ||||
STRING | GRMZM2G060876_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1885 | 33 | 97 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 9e-22 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G060876_P01 |
Publications ? help Back to Top | |||
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