PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G060834_P02
Common NameLOC100194380
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 373aa    MW: 39391.3 Da    PI: 8.0652
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G060834_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94.1e-32183236255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  GRMZM2G060834_P02 183 PRMRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 236
                        9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-15181237IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-28181236IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-23183237IPR006447Myb domain, plants
PfamPF002492.0E-7184235IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MELFPAHPDL QLQISPPPPA TKPMELGFWK RALVDTTTSP ATATAVAAAT TATTATSHAF  60
ASSAPTSAVG YHHAAVGAHH HQVPVPVPAG SHSHSHLGLP LLHHTHPILP AAESGGVLRR  120
PDLGSTRPIR GIPVYSTSQQ PLPFLQSHPH YCCDAIAGAG HPRSPKAALR LAGAPAKRGA  180
RAPRMRWTTS LHARFVHAVE LLGGHERATP KSVLELMDVK DLTLAHVKSH LQMYRTIKTT  240
DHRPASASSY GQAGGAKTII DIPDDDSSLF DLTNTTTTTS GSESSAQHSN PPDGSEHNGA  300
STCALWCNAS IRGAACWFVR DKSRDATPGD IKSFESLDDD VSDLNLSAPF QVAAATMFGG  360
GNKPNLDFTL GRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-16184238458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-16184238458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-16184238357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-16184238357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-16184238357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-16184238357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-16184238458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-16184238458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-16184238458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-16184238458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-16184238458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-16184238458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G060834
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G060834_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7268290.0KJ726829.1 Zea mays clone pUT3369 G2-like transcription factor (GLK47) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008681251.10.0putative MYB DNA-binding domain superfamily protein isoform X1
TrEMBLA0A3L6EQH80.0A0A3L6EQH8_MAIZE; Putative transcription factor KAN2
TrEMBLB4FIH30.0B4FIH3_MAIZE; G2-like transcription factor
STRINGGRMZM2G060834_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.13e-31G2-like family protein