PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G060544_P01 | ||||||||
Common Name | cl63098_1(337), LOB15 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | LBD | ||||||||
Protein Properties | Length: 313aa MW: 33961.8 Da PI: 6.6055 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.4 | 3.1e-30 | 4 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C++ C+++p++ p++q++++ +++k++G++ +l+ll+a p ++ r++a++sl+yeA+ r+ +PvyG+vg+++++q+q GRMZM2G060544_P01 4 SCNGCRVLRKGCSDACTIRPCLqwiksPEAQANATVFLAKFYGRAGLLNLLAAPPADHlRPAAFRSLLYEACGRIVNPVYGSVGLLWSGQWQ 95 6****************************************************987777********************************* PP DUF260 87 leqlkaelallke 99 +q+++e++l ++ GRMZM2G060544_P01 96 ACQAAVEAVLKGD 108 ******9988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.436 | 3 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-24 | 4 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSDACT IRPCLQWIKS PEAQANATVF LAKFYGRAGL LNLLAAPPAD 60 HLRPAAFRSL LYEACGRIVN PVYGSVGLLW SGQWQACQAA VEAVLKGDPI VQVQVDAASD 120 ASPPLGPRRH DIRHVARDPA AAPDVLLRSS SRKRAASSST SSKHNQPGSS KRASLGKNRQ 180 RAEQEPVPMV VEHGEESAGS HDHDHDQHHR LQGSEEDTDV EAASHAHSHV SQAEPEPEPE 240 TEPQSHAPPA CSQQQANQEH QDDEDEELAL ELTLGLEPLV RQRQRPKSSR SDCDHSGLSA 300 ASSLMCLRLQ LPA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.12212 | 0.0 | cell culture| endosperm |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G060544 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G060544_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU954764 | 0.0 | EU954764.1 Zea mays clone 1482325 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001142806.1 | 0.0 | uncharacterized protein LOC100275184 | ||||
TrEMBL | B6SPU9 | 0.0 | B6SPU9_MAIZE; LOB domain-containing protein 42 | ||||
STRING | GRMZM2G060544_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 | Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 5e-65 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G060544_P01 |
Entrez Gene | 100275184 |
Publications ? help Back to Top | |||
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