PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G060541_P01 | ||||||||
Common Name | ZEAMMB73_561359, Zm.43290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 240aa MW: 25865.8 Da PI: 9.2616 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.1 | 1.5e-18 | 49 | 103 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le ++ ++yps+++r eL++k+gL++rq ++WF+ rR k++k GRMZM2G060541_P01 49 KRVMKTPYQLEVLEYTYAVEHYPSEAKRLELSAKIGLSDRQLQMWFCHRRLKDRK 103 79999************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.03E-17 | 32 | 103 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-17 | 33 | 103 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.791 | 44 | 104 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.0E-15 | 46 | 108 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.06E-16 | 49 | 104 | No hit | No description |
Pfam | PF00046 | 2.6E-16 | 49 | 103 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 240 aa Download sequence Send to blast |
MDAGRDGDGA GKAPPKGPAD ATTVPPAPVA ASAPGSSAGT SGSGEKPVKR VMKTPYQLEV 60 LEYTYAVEHY PSEAKRLELS AKIGLSDRQL QMWFCHRRLK DRKPPSKRQR RDEESALAPV 120 MPPPPVLPAP VMPVASSDLM VGAPGPYDKL LQPVHLRRGA GRSSAVPRIS MPDLGRRYYE 180 PPPVMITPLM QLTQYELRVI NSVESQLGEP LREDGPALGI NFDPLPPGAF GAPIGMHIEI |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G060541 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G060541_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008656732.1 | 1e-156 | homeobox-DDT domain protein RLT2 isoform X2 | ||||
Refseq | XP_020397999.1 | 1e-156 | homeobox-DDT domain protein RLT2 isoform X1 | ||||
TrEMBL | A0A1D6G163 | 1e-157 | A0A1D6G163_MAIZE; Homeobox-DDT domain protein RLT1 | ||||
TrEMBL | A0A1D6G165 | 1e-157 | A0A1D6G165_MAIZE; Homeobox-DDT domain protein RLT1 | ||||
STRING | GRMZM2G060541_P01 | 1e-171 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16740 | 7 | 9 | Representative plant | OGRP1577 | 16 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G44180.1 | 8e-39 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G060541_P01 |