PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G060541_P01
Common NameZEAMMB73_561359, Zm.43290
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HB-other
Protein Properties Length: 240aa    MW: 25865.8 Da    PI: 9.2616
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G060541_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-1849103357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                        kR   t++qle+Le  ++ ++yps+++r eL++k+gL++rq ++WF+ rR k++k
  GRMZM2G060541_P01  49 KRVMKTPYQLEVLEYTYAVEHYPSEAKRLELSAKIGLSDRQLQMWFCHRRLKDRK 103
                        79999************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.03E-1732103IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-1733103IPR009057Homeodomain-like
PROSITE profilePS5007115.79144104IPR001356Homeobox domain
SMARTSM003893.0E-1546108IPR001356Homeobox domain
CDDcd000863.06E-1649104No hitNo description
PfamPF000462.6E-1649103IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDAGRDGDGA GKAPPKGPAD ATTVPPAPVA ASAPGSSAGT SGSGEKPVKR VMKTPYQLEV  60
LEYTYAVEHY PSEAKRLELS AKIGLSDRQL QMWFCHRRLK DRKPPSKRQR RDEESALAPV  120
MPPPPVLPAP VMPVASSDLM VGAPGPYDKL LQPVHLRRGA GRSSAVPRIS MPDLGRRYYE  180
PPPVMITPLM QLTQYELRVI NSVESQLGEP LREDGPALGI NFDPLPPGAF GAPIGMHIEI
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G060541
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G060541_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656732.11e-156homeobox-DDT domain protein RLT2 isoform X2
RefseqXP_020397999.11e-156homeobox-DDT domain protein RLT2 isoform X1
TrEMBLA0A1D6G1631e-157A0A1D6G163_MAIZE; Homeobox-DDT domain protein RLT1
TrEMBLA0A1D6G1651e-157A0A1D6G165_MAIZE; Homeobox-DDT domain protein RLT1
STRINGGRMZM2G060541_P011e-171(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1674079
Representative plantOGRP15771634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.18e-39Homeodomain-like transcriptional regulator