PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G060507_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TALE | ||||||||
Protein Properties | Length: 191aa MW: 22232.2 Da PI: 6.3703 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24.7 | 4e-08 | 141 | 174 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + GRMZM2G060507_P01 141 KWPYPTEDDKARLVEETGLQLKQINNWFINQRKR 174 469*****************************87 PP | |||||||
2 | ELK | 26.3 | 1.7e-09 | 95 | 116 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ GRMZM2G060507_P01 95 ELKIELKQGFKSRIEDVREEIL 116 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01256 | 7.5E-8 | 1 | 37 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.9E-10 | 2 | 36 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.132 | 95 | 115 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.71 | 115 | 178 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-10 | 117 | 182 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.84E-16 | 117 | 182 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.00E-11 | 118 | 179 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-25 | 122 | 181 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.1E-18 | 135 | 174 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MLLCSFREQL QQHVRVHAVE AVMACREIEQ SLQDLTGVTL EEGTGATMSE EDEDEAPMLE 60 VGLVDMGSDG HDMMGFGPLL PTDSERSLME RVRQELKIEL KQGFKSRIED VREEILRKRR 120 AGKLPGDTTS ILKQWWQQHS KWPYPTEDDK ARLVEETGLQ LKQINNWFIN QRKRNWHNNS 180 QTSTLKSKRK R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 4e-13 | 118 | 174 | 8 | 64 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 171 | 190 | RKRNWHNNSQTSTLKSKRKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.123929 | 0.0 | leaf| pedicel| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G060507 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in embryo at 3 days after pollination (DAP). {ECO:0000269|PubMed:10095070}. | |||||
Uniprot | TISSUE SPECIFICITY: Isoform 1 is expressed in roots and flowers, and at lower levels in leaf blades and leaf sheaths. Isoform 2 is expressed in roots and flowers. {ECO:0000269|PubMed:12034492}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G060507_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728496 | 0.0 | KJ728496.1 Zea mays clone pUT6801 HB transcription factor (HB20) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008660553.2 | 1e-140 | uncharacterized protein LOC100284833 isoform X1 | ||||
Swissprot | Q94LW3 | 1e-130 | KNOS3_ORYSJ; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A1D6PKW2 | 1e-138 | A0A1D6PKW2_MAIZE; Putative knotted-like transcription factor family protein | ||||
TrEMBL | K7WHE3 | 1e-138 | K7WHE3_MAIZE; HB transcription factor (Fragment) | ||||
STRING | GRMZM2G060507_P01 | 1e-139 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP564 | 38 | 169 | Representative plant | OGRP167 | 17 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 1e-112 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G060507_P01 |
Entrez Gene | 100284833 |
Publications ? help Back to Top | |||
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