PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G060485_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 545aa    MW: 58845.4 Da    PI: 6.843
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G060485_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.85e-28125178155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ +t+e+v+SHLQkYRl
  GRMZM2G060485_P01 125 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVENITRENVASHLQKYRL 178
                        79*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.7E-30122183IPR009057Homeodomain-like
PROSITE profilePS5129411.189122181IPR017930Myb domain
SuperFamilySSF466896.81E-20123182IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-24125178IPR006447Myb domain, plants
PfamPF002491.9E-6127177IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MTVDELKLQA RASGGHGAKD QFPVGMRVLA VDDDPTCLKI LENLLLRCQY HGMPRSSRSP  60
LSLSSPGNDN DDSGKKLQVV SAEGDNGGVN RNKRISRKGR DDNGDDGDDS DDNSNENGDS  120
SSQKKPRVVW SVELHRKFVA AVNQLGIDKA VPKKILDLMN VENITRENVA SHLQKYRLYL  180
KRLSADASRQ ANLTAAFGGR NPAYVNMGLD AFRQYNAYGR YRPVPTTNHS QPNNLLARMN  240
SPAFGMHGLL PSQPLQIGHN QNNLSTSLGN VGGMNNGNLI RGAHMPLQDT SKCFPTGPSG  300
NSFANISNST QLVTTNNLPL QSLEPSNQQH LGRLHSSADP FNSFVGEPPQ FADLGRCNTT  360
WPTAVSSSNV QEIGQKDRIV NRPKLEPLSS FTEASSQIPL LGSEMQSHQV ASLASNGLPM  420
PFTQEAVPFA YGSSTNSREM LNNNLALSNS GVNSTLPNLR IDGSVVPGQT LGGSNSGGCV  480
VPPLQDGRID HQAVSSHLNY NNELMGTGRL QRGLSGGLDD IVVDMFRPDR ADDGVSFIDG  540
DWELV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-26121184164ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.3650.0cell culture| meristem| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G060485
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G060485_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8587600.0HQ858760.1 Zea mays clone UT1502 ARR-B transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001104863.10.0response regulator 9
SwissprotQ6H8050.0ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLF1DK020.0F1DK02_MAIZE; ARR-B transcription factor (Fragment)
STRINGGRMZM2G060485_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81473447
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.15e-34response regulator 18
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]