PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G060319_P01 | ||||||||
Common Name | LOC100286105, TCP15, ZEAMMB73_190242 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TCP | ||||||||
Protein Properties | Length: 274aa MW: 29352.3 Da PI: 6.0927 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.5 | 1.2e-34 | 74 | 177 | 3 | 79 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........................sss 68 ++drhski T++g RdRR+Rls+ +a++fF+Lqd+LGfdk+skt++WLl+q+kpai+ l++ +ss GRMZM2G060319_P01 74 FRTDRHSKIRTAQGVRDRRMRLSVGVAREFFALQDRLGFDKASKTVNWLLTQSKPAIDRLVDAaaaaddpaavaasggrrptvvrgrgeGSS 165 689************************************************************88877777777777777777777764333 PP TCP 69 sasec..eaesss 79 s+ c ++s++ GRMZM2G060319_P01 166 SS-TCccLTDSRE 177 33.3334222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 33.985 | 75 | 133 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.1E-32 | 75 | 143 | IPR005333 | Transcription factor, TCP |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MPSTAAMSSS WDGYGGQIFP ADMSSFHRHQ DTLEAVFHHP PPETTTTTGL LRNDGSSPVV 60 DDGGGHAAPR RRPFRTDRHS KIRTAQGVRD RRMRLSVGVA REFFALQDRL GFDKASKTVN 120 WLLTQSKPAI DRLVDAAAAA DDPAAVAASG GRRPTVVRGR GEGSSSSTCC CLTDSREAAE 180 EATGNGRSRG GPDDGPPAAL LEGHGGCGEL GWIMSGAPTA AVATTTTTTP QQPDGHEYYY 240 QYCLQLEEMM RCSNDEGETT PGDFLYGMQT RDRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-14 | 80 | 133 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 3e-14 | 80 | 133 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.127259 | 0.0 | shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G060319 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G060319_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063457 | 0.0 | BT063457.1 Zea mays full-length cDNA clone ZM_BFc0065H12 mRNA, complete cds. | |||
GenBank | EU975636 | 0.0 | EU975636.1 Zea mays clone 494952 teosinte branched1 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001152465.2 | 0.0 | teosinte branched1 protein | ||||
TrEMBL | C0P588 | 0.0 | C0P588_MAIZE; TCP transcription factor | ||||
STRING | GRMZM2G060319_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4052 | 31 | 72 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 2e-25 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G060319_P01 |