PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G060265_P01 | ||||||||
Common Name | GRAS53, LOC103630535, Zm.37509 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GRAS | ||||||||
Protein Properties | Length: 481aa MW: 51254.8 Da PI: 6.5752 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 274.4 | 3.5e-84 | 126 | 480 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 v++L e+A+ ++gd a+++Larl+ l + +++p+ R a+yf+eAL+a l+ +++a ++ ++++ ++ +l a+k fse++P+ GRMZM2G060265_P01 126 VDQLAEAAKLAEAGDVFGAREILARLNYLlppGAATATPLLRSAFYFKEALRAALST----TASATAAAAAAPVDVLLKLGAYKDFSELCPV 213 689**************************5544445589*****************9....667777777777889**************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 l+f+h+t+ qa+l+++ g+ ++H++D+di+ G QW++L+q+LasR+ g + l++T+++s++s++ el+ ++e+L++fA+e++vpf+ ++ GRMZM2G060265_P01 214 LQFAHFTCVQAMLDELGGAACIHVLDLDIGVGEQWASLMQELASRRPG-AALKVTALVSAASHHPLELQLVHENLSNFAAETRVPFQLAFF- 303 ********************************************9655.89***************************************9. PP GRAS 183 akrledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 +l+++++ eL ++ g+a+aV+l + + + ++vL+lv++l +k+vv v++ +d+++ +F+++f +++ l++sl+a GRMZM2G060265_P01 304 --NLDAMDPAELlATAAGDAVAVHLPAGSVHAP----A----VPSVLHLVRRLGAKLVVSVDRSCDRGELPFAAHFQSCV----FLLESLDA 381 ..888888877626667**********999999....4....456******************************97765....68888877 PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365 ++ + +k+Er+l++++i+ ++a + ++ + + Wr++l +aGF pv+ s+ a++qa++ll+kv+++g+rve++ gslvl W++ GRMZM2G060265_P01 382 V-GTGPDITAKIERFLIQPRIERCLAERYRA-AAAGDKTPPWRAMLVSAGFVPVQASSLAEAQAEALLKKVPVRGFRVEKRAGSLVLHWQRG 471 6.6778999*********************9.7888889***************************************************** PP GRAS 366 pLvsvSaWr 374 +L+svSaWr GRMZM2G060265_P01 472 ELLSVSAWR 480 ********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.264 | 99 | 460 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-81 | 126 | 480 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence Send to blast |
MHMPPLGLGA AEAWEPHAQP PGPGGLTLSH AQQTHDSTFL GWFIADDVAM SGVMDDHNSH 60 SVLHDLDHIP SSSVPPPQFQ PLAPHVHYPP KLHHHQNPVV PASPPKHTLL KPKPEAPGTD 120 DASTAVDQLA EAAKLAEAGD VFGAREILAR LNYLLPPGAA TATPLLRSAF YFKEALRAAL 180 STTASATAAA AAAPVDVLLK LGAYKDFSEL CPVLQFAHFT CVQAMLDELG GAACIHVLDL 240 DIGVGEQWAS LMQELASRRP GAALKVTALV SAASHHPLEL QLVHENLSNF AAETRVPFQL 300 AFFNLDAMDP AELLATAAGD AVAVHLPAGS VHAPAVPSVL HLVRRLGAKL VVSVDRSCDR 360 GELPFAAHFQ SCVFLLESLD AVGTGPDITA KIERFLIQPR IERCLAERYR AAAAGDKTPP 420 WRAMLVSAGF VPVQASSLAE AQAEALLKKV PVRGFRVEKR AGSLVLHWQR GELLSVSAWR 480 C |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-24 | 105 | 479 | 2 | 377 | Protein SCARECROW |
5b3h_D | 2e-24 | 105 | 479 | 2 | 377 | Protein SCARECROW |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G060265 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G060265_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726960 | 0.0 | KJ726960.1 Zea mays clone pUT3660 GRAS transcription factor (GRAS53) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008649813.1 | 0.0 | scarecrow-like protein 6 | ||||
TrEMBL | A0A060CVG2 | 0.0 | A0A060CVG2_MAIZE; GRAS transcription factor (Fragment) | ||||
STRING | GRMZM2G060265_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6723 | 29 | 54 | Representative plant | OGRP1750 | 12 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 1e-77 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G060265_P01 |
Entrez Gene | 103630535 |