PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G060249_P01 | ||||||||
Common Name | EREB75, LOC100383131 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 155aa MW: 17277.4 Da PI: 12.5343 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 22.1 | 3.8e-07 | 40 | 60 | 1 | 22 |
AP2 1 sgykGVrwdkkrgrWvAeIrdp 22 ++y GVr+++ +gr++AeIrdp GRMZM2G060249_P01 40 TRYLGVRRRP-WGRYAAEIRDP 60 5799******.**********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.3E-8 | 41 | 65 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 9.414 | 41 | 69 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-5 | 41 | 66 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MFPWGGFGSE QRSAGEQRRC VLRSWARPLV AQPQADANTT RYLGVRRRPW GRYAAEIRDP 60 ATKDTTVSRA PSAAPTRAPT SPTRTSRRAP PSRPTSPRTT PRATTPRSSS SHSTPPTQPP 120 RLYHRRSRPR TTRQATAIVS RTCPLSWTTS PYPTT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.52151 | 0.0 | meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G060249 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G060249_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY664415 | 0.0 | AY664415.1 Zea mays cultivar B73 locus 9009, complete sequence. | |||
GenBank | BT066293 | 0.0 | BT066293.2 Zea mays full-length cDNA clone ZM_BFc0178I24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023156478.1 | 9e-18 | uncharacterized protein LOC111589793 | ||||
TrEMBL | C0PDC4 | 2e-99 | C0PDC4_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G060249_P01 | 1e-100 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 2e-10 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G060249_P01 |
Entrez Gene | 100383131 |