PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G060216_P01 | ||||||||
Common Name | lg2, liguleless2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 531aa MW: 57679.9 Da PI: 6.7326 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.9 | 3.4e-11 | 221 | 250 | 4 | 33 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ GRMZM2G060216_P01 221 AKTERRLAQNREAARKSRLRKKAYVQQLET 250 799*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.2E-8 | 218 | 294 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.243 | 220 | 264 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.0E-7 | 220 | 264 | No hit | No description |
Pfam | PF00170 | 4.8E-8 | 221 | 251 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.74E-7 | 222 | 265 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 225 | 240 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 2.1E-29 | 303 | 377 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 531 aa Download sequence Send to blast |
MVQGEESSWR MERAALPLNQ ALAYGVQAHA AAAAAPPTCF LDFQPAAASA AYFGFGELEE 60 ALIHGGGAAS AGGGVDPGVI IKNDVAQAKS AAGYLAGAGT GRPPTLEIFP SWPMRHQQQL 120 HSGNSQSVGS TGTDSSSAQN TMSQMELVSP ASSAPRQEVM MVTTDDYSYK PGLAAAPAAA 180 APPSFQQHHP LPLQLHGGEG GGDHDKRKHG STRKDGKLVD AKTERRLAQN REAARKSRLR 240 KKAYVQQLET SRIRLQQVEH ELQRARSQGL FVGGCSAAGD MSSGAAMFDM EYARWLDDDT 300 KRLAELRGGL QAHLLDGNLG LIVEECMQHY DELFQLKAAL ARSDVFHLLT GSWATPAERC 360 FFWMGGFRPS ELLKILIPQL DPLTEQQLLG ICNLQQSSEQ AEEALAQGLH QLHQSLADTV 420 AAGTLNDGAA APNYMNIMAV ALEKLASLEN FYQQADNLRH QTLHQMRRIL TTRQAARCFL 480 SIGEYYSRLR ALSNLWASRP RDNFIGTESL SPTATELQAL HHQQQNQFAG F |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.16855 | 0.0 | ear| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G060216 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expression in meristem/developing ligule regions. {ECO:0000269|PubMed:9490265}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269|PubMed:9490265}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G060216_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF036949 | 0.0 | AF036949.1 Zea mays basic leucine zipper protein (liguleless2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001104893.1 | 0.0 | transcription factor LG2 | ||||
Swissprot | O49067 | 0.0 | LG2_MAIZE; Transcription factor LG2 | ||||
TrEMBL | A0A1R3PT62 | 0.0 | A0A1R3PT62_MAIZE; Basic leucine zipper protein | ||||
STRING | GRMZM2G060216_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3809 | 31 | 66 | Representative plant | OGRP10696 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.3 | 1e-136 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G060216_P01 |
Entrez Gene | 541670 |
Publications ? help Back to Top | |||
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