PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G060206_P01
Common NameLOC103655274, ZEAMMB73_390075
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 124aa    MW: 13231.6 Da    PI: 9.0856
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G060206_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.5e-20859155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                       ++y+GVr+++ +g+++AeIrd      ++ r +lg+f+taeeAa+a+++a+ +++g
  GRMZM2G060206_P01  8 TKYRGVRRRP-SGKFAAEIRDS---SrQSVRMWLGTFDTAEEAARAYDRAAYAMRG 59
                       69********.7*********3...2236*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-15859IPR001471AP2/ERF domain
CDDcd000181.50E-18868No hitNo description
SuperFamilySSF541718.5E-23968IPR016177DNA-binding domain
PROSITE profilePS5103222.906967IPR001471AP2/ERF domain
SMARTSM003805.3E-33973IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-30968IPR001471AP2/ERF domain
PRINTSPR003677.4E-101021IPR001471AP2/ERF domain
PRINTSPR003677.4E-103349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MDDGGEPTKY RGVRRRPSGK FAAEIRDSSR QSVRMWLGTF DTAEEAARAY DRAAYAMRGQ  60
IAVLNFPAEA RNYVRGGSSS SRQQQQGGGG GGGSGGGAGQ QVIELECLDD QVLQEMLKGG  120
DGKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-3211121114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G060206
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G060206_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008680276.12e-84ethylene-responsive transcription factor ERF096
SwissprotQ9LTC57e-33ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A3L6F0716e-83A0A3L6F071_MAIZE; Ethylene-responsive transcription factor 14
TrEMBLK7UT746e-83K7UT74_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
STRINGGRMZM2G060206_P019e-84(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.11e-21Ethylene-responsive element binding factor 14
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]