PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G060206_P01 | ||||||||
Common Name | LOC103655274, ZEAMMB73_390075 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 124aa MW: 13231.6 Da PI: 9.0856 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.5 | 4.5e-20 | 8 | 59 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g+++AeIrd ++ r +lg+f+taeeAa+a+++a+ +++g GRMZM2G060206_P01 8 TKYRGVRRRP-SGKFAAEIRDS---SrQSVRMWLGTFDTAEEAARAYDRAAYAMRG 59 69********.7*********3...2236*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.9E-15 | 8 | 59 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.50E-18 | 8 | 68 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-23 | 9 | 68 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.906 | 9 | 67 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.3E-33 | 9 | 73 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-30 | 9 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-10 | 10 | 21 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-10 | 33 | 49 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MDDGGEPTKY RGVRRRPSGK FAAEIRDSSR QSVRMWLGTF DTAEEAARAY DRAAYAMRGQ 60 IAVLNFPAEA RNYVRGGSSS SRQQQQGGGG GGGSGGGAGQ QVIELECLDD QVLQEMLKGG 120 DGKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-32 | 1 | 112 | 1 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G060206 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G060206_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008680276.1 | 2e-84 | ethylene-responsive transcription factor ERF096 | ||||
Swissprot | Q9LTC5 | 7e-33 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A3L6F071 | 6e-83 | A0A3L6F071_MAIZE; Ethylene-responsive transcription factor 14 | ||||
TrEMBL | K7UT74 | 6e-83 | K7UT74_MAIZE; Putative AP2/EREBP transcription factor superfamily protein | ||||
STRING | GRMZM2G060206_P01 | 9e-84 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04370.1 | 1e-21 | Ethylene-responsive element binding factor 14 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G060206_P01 |
Entrez Gene | 103655274 |
Publications ? help Back to Top | |||
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