PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G059939_P01
Common NameLOC100273875
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 306aa    MW: 32931.1 Da    PI: 11.382
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G059939_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2409.7e-1372120155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+ykGV   + +grW A+I++      r +r++lg+f  + eAa+a++ a+++++g
  GRMZM2G059939_P01  72 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEAEAARAYDVAAQRFRG 120
                        89****9888.8*********......44**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-872120IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-1672128IPR016177DNA-binding domain
CDDcd000182.09E-2272128No hitNo description
SMARTSM003801.3E-2673134IPR001471AP2/ERF domain
PROSITE profilePS5103219.86273128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.8E-2073128IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.106.1E-12197235IPR015300DNA-binding pseudobarrel domain
CDDcd100171.61E-7204236No hitNo description
SuperFamilySSF1019362.35E-8204238IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDSTSCLVDD ASSGASTGKK PAPAPAAATG KPLQRVGSGT SAVMDAAEPG AEADSGGAGR  60
APGGVSGKLP SSKYKGVVPQ PNGRWGAQIY ERHQRVWLGT FTGEAEAARA YDVAAQRFRG  120
RDAVTNFRPL AESEPEAAVE LRFLASRSKA EVVDMLRKHT YGEELAHNRR AFAAASPAAS  180
PPPENNRRPP AASSSSSPAA AREHLFDKTV TPSDVGKLNR LVIPKQHAEK HFPLRRVQGR  240
APQLRGRRRE GVEVPVLVLE QQPELRADQG VEPLRQGEGA PRRRRRRVLP FRRRQAAALH  300
RLQAPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1281286RRRRRR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G059939
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G059939_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0419620.0BT041962.2 Zea mays full-length cDNA clone ZM_BFb0089O18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141742.11e-166uncharacterized protein LOC100273875
SwissprotQ6L4H41e-116Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLB4FXX41e-164B4FXX4_MAIZE; AP2/ERF and B3 domain-containing transcription repressor TEM1
STRINGGRMZM2G059939_P021e-165(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.13e-57related to ABI3/VP1 1
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]