PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G059428_P03 | ||||||||
Common Name | Zm.34249 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 172aa MW: 19421.2 Da PI: 10.3119 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.8 | 1.1e-49 | 17 | 143 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 pGfrFhPt+eel+ +yL + v+gk+l++ ++i +++iy+++PwdLp+++k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d+++ s GRMZM2G059428_P03 17 PGFRFHPTEEELLGFYLSRVVHGKQLHF-DIIGSLNIYRYDPWDLPAMAKIGEREWYFFVPRDRKAGSGGRPNRTTERGFWKATGSDRAIRS 107 9*************************99.99***************99999****************************************9 PP NAM 95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++glkktLvfy+grap+g+ktdWvm+eyrl GRMZM2G059428_P03 108 SadAKRVIGLKKTLVFYQGRAPRGTKTDWVMNEYRL 143 9777888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-54 | 6 | 149 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.978 | 15 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-25 | 17 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MAVMAGAASM EVEQDLPGFR FHPTEEELLG FYLSRVVHGK QLHFDIIGSL NIYRYDPWDL 60 PAMAKIGERE WYFFVPRDRK AGSGGRPNRT TERGFWKATG SDRAIRSSAD AKRVIGLKKT 120 LVFYQGRAPR GTKTDWVMNE YRLPDHSAAG RAAPPLPPKV IQRSSAPLHF CT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-48 | 11 | 143 | 10 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G059428 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G059428_P03 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT084524 | 0.0 | BT084524.1 Zea mays full-length cDNA clone ZM_BFb0127I09 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001344533.1 | 1e-114 | uncharacterized protein LOC100501100 | ||||
Swissprot | Q10S65 | 1e-92 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A1D6JMV6 | 1e-113 | A0A1D6JMV6_MAIZE; NAC-transcription factor 53 | ||||
STRING | GRMZM2G059428_P01 | 1e-113 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 3e-73 | NAC domain containing protein 36 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G059428_P03 |
Publications ? help Back to Top | |||
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